| MirGeneDB ID | Xbo-Novel-11 |
|---|
| Family name |
XBO-NOVEL-11 (all species) |
|---|
| Seed |
GCCUAGG |
|---|
| Species |
Xenoturbella (Xenoturbella bocki) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
X. bocki
|
|---|
| Node of Origin (family) |
X. bocki
|
|---|
Genome context
(genome.xe) |
scaffold938: 39028-39088 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CCGGUCCUCGCUAUUAAUAUCACACUGGAUUUGAUGACGUCGAUCGAGGCGAUACAUAUCAAUGGUUAUUGCCUAGGUGAUGUCAUCAAGUCCAUCUGGUAUCGUAACAUCGCUGGAUUCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CCGGUCCUCGCUAUUAA---| CAC G G ACAUAU
UAUCA UGGAUUUGAUGACGUC AUC AGGCGAU C
AUGGU ACCUGAACUACUGUAG UGG UCCGUUA A
CCUUAGGUCGCUACAAUGCU^ CU- - A UUGGUA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Xbo-Novel-11_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UUGAUGACGUCGAUCGAGGCGAU -23
Get sequence
|
|---|
| Mature sequence |
Xbo-Novel-11_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UGCCUAGGUGAUGUCAUCAAGU -61
Get sequence
|
|---|
