MirGeneDB 3.0

MirGeneDB ID

Xbo-Novel-2

Family name XBO-NOVEL-2 (all species)
Seed GCCGUCU
Species Xenoturbella (Xenoturbella bocki)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) X. bocki
Node of Origin (family) X. bocki
Genome context
(genome.xe)
scaffold2339: 30693-30755 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCUGAAACAAGAGUUGUGACUGUCCCCAGUUGCCGUCUACUUUACUCCUCGCGUGGAUAUUCUAAGCUCACACGAGAGUUAAGCGACGUCGACUGGAGAUGGUUGAUAUCGUCGUUGUCGUCC
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Structure
        10          20        30        40        50        60  
UCUGAAACAAGAGUUGU--|      C       C    UA   U    C   C UGGAUAUU 
                   GACUGUC CCAGUUG CGUC  CUU ACUC UCG G        \
                   UUGGUAG GGUCAGC GCAG  GAA UGAG AGC C        C
CCUGCUGUUGCUGCUAUAG^      A       U    C-   U    -   A ACUCGAAU 
 120       110       100        90         80         70
Deep sequencing
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Mature sequence

Xbo-Novel-2_5p

mirBase accessionNone
Sequence
0- UGCCGUCUACUUUACUCCUCGCG -23
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Star sequence

Xbo-Novel-2_3p*

mirBase accessionNone
Sequence
42- CGAGAGUUAAGCGACGUCGAC -63
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