| MirGeneDB ID | Xbo-Novel-4 |
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| Family name |
XBO-NOVEL-4 (all species) |
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| Seed |
GCCGUCU |
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| Species |
Xenoturbella (Xenoturbella bocki) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
X. bocki
|
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| Node of Origin (family) |
X. bocki
|
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Genome context
(Xbocki_plus) |
3C-assembly_contig_1899: 3645412-3645474 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UCUGAAACAAGAGUUGUGACUGUCCCCAGUUGCCGUCUACUUUACUCCUCGCGUGGAUAUUCUAAGCUCACACGAGAGUUAAGCGACGUCGACUGGAGAUGGUUGAUAUCGUCGUUGUCGUCC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UCUGAAACAAGAGUUGU--| C C UA U C C UGGAUAUU
GACUGUC CCAGUUG CGUC CUU ACUC UCG G \
UUGGUAG GGUCAGC GCAG GAA UGAG AGC C C
CCUGCUGUUGCUGCUAUAG^ A U C- U - A ACUCGAAU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Xbo-Novel-4_5p |
| mirBase accession | None |
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| Sequence |
0- UGCCGUCUACUUUACUCCUCGCG -23
Get sequence
|
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| Star sequence |
Xbo-Novel-4_3p* |
| mirBase accession | None |
|---|
| Sequence |
42- CGAGAGUUAAGCGACGUCGAC -63
Get sequence
|
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