| MirGeneDB ID | Xbo-Novel-4 |
|---|
| Family name |
XBO-NOVEL-4 (all species) |
|---|
| Seed |
GUAGGGU |
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| Species |
Xenoturbella (Xenoturbella bocki) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
X. bocki
|
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| Node of Origin (family) |
X. bocki
|
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Genome context
(genome.xe) |
scaffold1578: 18888-18946 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UCCAGUGUUGCGCUGUUGUCCAGUGUUGCUGGUAGGGUAGAACUAACCUGUCAAAUGUUCAGUGUGACAGGUUAGAUCUGCUGUACAGGCAAAAUUGGAUCUCAUCAUCAAAUAUGAAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UCCAGUGUUGCGCUGUU--| G G G A AAAUGU
GUCCAGU UUGCU GUA GGUAGA CUAACCUGUC \
UAGGUUA AACGG CAU UCGUCU GAUUGGACAG U
CAAGUAUAAACUACUACUC^ A A G A UGUGAC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Xbo-Novel-4_5p |
| mirBase accession | None |
|---|
| Sequence |
0- GGUAGGGUAGAACUAACCUGUC -22
Get sequence
|
|---|
| Star sequence |
Xbo-Novel-4_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- CAGGUUAGAUCUGCUGUACAGG -59
Get sequence
|
|---|
