| MirGeneDB ID | Xbo-Novel-8 |
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| Family name |
XBO-NOVEL-8 (all species) |
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| Seed |
CGUAUUC |
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| Species |
Xenoturbella (Xenoturbella bocki) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
X. bocki
|
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| Node of Origin (family) |
X. bocki
|
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Genome context
(genome.xe) |
scaffold12462: 3634-3694 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UAUACAUUCAGUGUUAUGGUUGUGUUGGGACCGUAUUCCAUGUUGUUGCACUGUGAAUUGUGUCAGUGGUGCAGCAUUAUGGAGUGCCGUUUCACCACAAUUCAGAUCAGCAAUGUAGCAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UAUACAUUCAGUGUUAU--| U GG C U GUGAAUU
GGUUGUG UG AC GUAUUCCAUG UGUUGCACU \
UUAACAC AC UG CGUGAGGUAU ACGACGUGG G
AACGAUGUAACGACUAGAC^ C UU C U UGACUGU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
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| Mature sequence |
Xbo-Novel-8_5p |
| mirBase accession | None |
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| Sequence |
0- CCGUAUUCCAUGUUGUUGCACU -22
Get sequence
|
|---|
| Star sequence |
Xbo-Novel-8_3p* |
| mirBase accession | None |
|---|
| Sequence |
39- UGCAGCAUUAUGGAGUGCCGUU -61
Get sequence
|
|---|
