| MirGeneDB ID | Xbo-Novel-9 |
|---|
| Family name |
XBO-NOVEL-9 (all species) |
|---|
| Seed |
AUACAUC |
|---|
| Species |
Xenoturbella (Xenoturbella bocki) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
X. bocki
|
|---|
| Node of Origin (family) |
X. bocki
|
|---|
Genome context
(genome.xe) |
scaffold628: 118237-118291 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AUGGAUCCCCCCAGGCACAGCGGCUGAGUGUCUGGAUACGGGUUAUGUACAGGACCUCUCGUUGUAUACAUCCUGUAUCCGGACCCUUGCUGUUGUACAUUCGACCGGCAGUCGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUGGAUCCCCCCAGGCA---| U U UUA GGACC
CAGCGGC GAG GUCUGGAUACGGG UGUACA \
GUUGUCG UUC CAGGCCUAUGUCC AUAUGU U
AGCUGACGGCCAGCUUACAU^ - C UAC UGCUC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Xbo-Novel-9_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UCUGGAUACGGGUUAUGUACA -21
Get sequence
|
|---|
| Mature sequence |
Xbo-Novel-9_3p |
| mirBase accession | None |
|---|
| Sequence |
34- UAUACAUCCUGUAUCCGGACC -55
Get sequence
|
|---|
