| MirGeneDB ID | Xla-Mir-12478-P1 |
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| Family name |
MIR-12478 (all species) |
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| Seed |
GCUGGAG |
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| Species |
African clawed frog (Xenopus laevis) |
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| MiRBase ID |
|
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| Paralogues |
Xla-Mir-12478-P2-v1
Xla-Mir-12478-P2-v2
|
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| Orthologues |
Xtr-Mir-12478
|
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| Node of Origin (locus) |
X. laevis
|
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| Node of Origin (family) |
Xenopus
|
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Genome context
(GCF_001663975.1_XLA_v2) |
NC_030740.1: 95387196-95387252 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CUCACAGAAGUUAACAAUUAACUCCUUCACUGCUGGAGUGGACAUCAAUGCAUUAUUUUGCAAGGCGUUGUAGGCCUCUCCAGCAUUGAAUGGGUUAAACUACCCUGGUCACCAUGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUCACAGAAGUUAACAA--| C C U ACAU AUUAUU
UUAACUC UUCA UGCUGGAG GG CAAUGC \
AAUUGGG AAGU ACGACCUC CC GUUGCG U
UGUACCACUGGUCCCAUCA^ U U U GGAU GAACGU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Dicer cut -1 on both arms. |
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Mature sequence |
Xla-Mir-12478-P1_5p |
| mirBase accession | None |
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| Sequence |
0- UGCUGGAGUGGACAUCAAUGCA -22
Get sequence
|
|---|
| Star sequence |
Xla-Mir-12478-P1_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- CGUUGUAGGCCUCUCCAGCAUU -57
Get sequence
|
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