MirGeneDB ID | Xla-Novel-1 |
---|---|
Family name | XLA-NOVEL-1 (all species) |
Seed | CUUUUGU |
Species | African clawed frog (Xenopus laevis) |
MiRBase ID | |
Paralogues | |
Orthologues | |
Node of Origin (locus) | X. laevis |
Node of Origin (family) | X. laevis |
Genome context (GCF_001663975.1_XLA_v2) |
NC_030740.1: 80641622-80641683 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | UUUUAUAAUGUGUCAAAAGCCUAGACAUGCUCUUUUGUCAGCUUUUGGAUUCAAAAUGGUUGCAUUGCUGAGCCAAUAGCAAACAAGGGAGCAUGUAUAUGUAGCAAUCUCCUGCGAUGGUUGet precursor sequence |
Structure | 10 20 30 40 50 60 UUUUAUAAUGUGUCAAAA--| C G CA U A AAAUGGU GC UA ACAUGCUCUUUUGU GCU UUGG UUCA \ UG AU UGUACGAGGGAACA CGA AACC GAGU U UUGGUAGCGUCCUCUAACGA^ U A AA U - CGUUACG 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | No |
Motifs | CNNC at 3p(+17) |
Mature sequence | Xla-Novel-1_5p |
mirBase accession | None |
Sequence |
0- UCUUUUGUCAGCUUUUGGAUUCA -23
Get sequence
|
Star sequence | Xla-Novel-1_3p* |
mirBase accession | None |
Sequence |
40- AGCCAAUAGCAAACAAGGGAGC -62
Get sequence
|