MirGeneDB ID | Xla-Novel-10 |
---|---|
Family name | XLA-NOVEL-10 (all species) |
Seed | AAUUGAU |
Species | African clawed frog (Xenopus laevis) |
MiRBase ID | |
Paralogues | |
Orthologues | |
Node of Origin (locus) | X. laevis |
Node of Origin (family) | X. laevis |
Genome context (GCF_001663975.1_XLA_v2) |
NC_030736.1: 45266004-45266062 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | CAAUCCAGGGAAUCCAGAGCAUUGAGCAGUAAAUUGAUUCUGUUGAACUCAAGAUUGACCCGUGUUGAGUUUAACUGUAUUGGUUUGGCUGCUCCAUGCUGUUAAACUAUAUUCCGCUCGet precursor sequence |
Structure | 10 20 30 40 50 CAAUCCAGGGAAUCCAG-- U -| UG UCU AGAUUG AGCAU GAGCAG UAAAU AU GUUGAACUCA A UCGUA CUCGUC GUUUG UA CAAUUUGAGU C CUCGCCUUAUAUCAAAUUG C G^ GU UGU UGUGCC 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | No |
Motifs | No |
Mature sequence | Xla-Novel-10_5p |
mirBase accession | None |
Sequence |
0- AAAUUGAUUCUGUUGAACUCA -21
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|
Star sequence | Xla-Novel-10_3p* |
mirBase accession | None |
Sequence |
37- AGUUUAACUGUAUUGGUUUGGC -59
Get sequence
|