MirGeneDB ID | Xla-Novel-11 |
---|---|
Family name | XLA-NOVEL-11 (all species) |
Seed | AGCAGUG |
Species | African clawed frog (Xenopus laevis) |
MiRBase ID | |
Paralogues | |
Orthologues | |
Node of Origin (locus) | X. laevis |
Node of Origin (family) | X. laevis |
Genome context (GCF_001663975.1_XLA_v2) |
NC_030738.1: 88272754-88272817 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | AUACAUUCCGAUACUUUCUGGACUGCAAGUAAGCAGUGUGCAGGGUUGUUUUUUAAUACUAACUCAAUGAGGAACAAACCUGCACACUGCUAUCUUGCAGUCUAGACUUCAGAGCACUGCUUAUGet precursor sequence |
Structure | 10 20 30 40 50 60 AUACAUUCCGAUACUUU--| UA G UUAAUACU CUGGACUGCAAG AGCAGUGUGCAGG UUGUUUU A GAUCUGACGUUC UCGUCACACGUCC AACAAGG A UAUUCGUCACGAGACUUCA^ UA A AGUAACUC 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | No |
Motifs | No |
Mature sequence | Xla-Novel-11_5p |
mirBase accession | None |
Sequence |
0- AAGCAGUGUGCAGGGUUGUUUU -22
Get sequence
|
Star sequence | Xla-Novel-11_3p* |
mirBase accession | None |
Sequence |
42- AACAAACCUGCACACUGCUAUC -64
Get sequence
|