| MirGeneDB ID | Xla-Novel-12 |
|---|
| Family name |
XLA-NOVEL-12 (all species) |
|---|
| Seed |
AGAAGUG |
|---|
| Species |
African clawed frog (Xenopus laevis) |
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| MiRBase ID |
|
|---|
| Paralogues |
|
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| Orthologues |
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| Node of Origin (locus) |
X. laevis
|
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| Node of Origin (family) |
X. laevis
|
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Genome context
(GCF_001663975.1_XLA_v2) |
NC_030739.1: 67223618-67223680 [-]
UCSC
Ensembl
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|---|
Precursor
(pre-Mir +30nt flank) |
CUUUUAAGCUCGUGUCUAGGGUUGUUGUGGUGCAUGUGAGAGCACAACUACUGAUUUAUAUGUGGCGUCGGUAGAAGUGAUGUCACAUGCAUGCACAAUGUCUCCUAAAUCUACAGAUUUUGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CUUUUAAGCUCGUGUCUA- U -| GAG AA GAUUUAUA
GGG UGUUGUG GUGCAUGUGA CAC CUACU \
CUC GUAACAC UACGUACACU GUG GAUGG U
UGUUUUAGACAUCUAAAUC U G^ GUA AA CUGCGGUG
120 110 100 90 80 70 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Star sequence |
Xla-Novel-12_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UGCAUGUGAGAGCACAACUACU -22
Get sequence
|
|---|
| Mature sequence |
Xla-Novel-12_3p |
| mirBase accession | None |
|---|
| Sequence |
41- UAGAAGUGAUGUCACAUGCAUG -63
Get sequence
|
|---|
