| MirGeneDB ID | Xla-Novel-3 |
|---|
| Family name |
XLA-NOVEL-3 (all species) |
|---|
| Seed |
ACUGUCU |
|---|
| Species |
African clawed frog (Xenopus laevis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
X. laevis
|
|---|
| Node of Origin (family) |
X. laevis
|
|---|
Genome context
(GCF_001663975.1_XLA_v2) |
NC_030724.1: 100262819-100262881 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UUUUUUUUUUUUUUUUUUUGCAUUUUGCCCCACUGUCUGUAAUGAGCCCUCUAUUUUCUUAACACACUAGAGAGCUCAUUUAUUGAUCGUGGGGCAGGGUGCAAAGCACAAAAAAAGACACAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UUUUUUUUUUUUUUUUU-- U UGU-| C AUUUUCU
UUGCAUUUUGCCCCAC GUC AAUGAGC CUCU U
AACGUGGGACGGGGUG UAG UUACUCG GAGA A
AACACAGAAAAAAACACGA C UUAU^ A UCACACA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Xla-Novel-3_5p |
| mirBase accession | None |
|---|
| Sequence |
0- CACUGUCUGUAAUGAGCCCUCU -22
Get sequence
|
|---|
| Star sequence |
Xla-Novel-3_3p* |
| mirBase accession | None |
|---|
| Sequence |
40- AGAGCUCAUUUAUUGAUCGUGGG -63
Get sequence
|
|---|
