| MirGeneDB ID | Xla-Novel-4 |
|---|
| Family name |
XLA-NOVEL-4 (all species) |
|---|
| Seed |
AACACAG |
|---|
| Species |
African clawed frog (Xenopus laevis) |
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| MiRBase ID |
|
|---|
| Paralogues |
|
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| Orthologues |
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| Node of Origin (locus) |
X. laevis
|
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| Node of Origin (family) |
X. laevis
|
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Genome context
(GCF_001663975.1_XLA_v2) |
NC_030726.1: 17766247-17766306 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GGCUCUCUGCCUGUGUUGGCCUGUUUGCAGAAACACAGAAUGGGUAUGAGUGUGAAACUUCAUUUUCAUUGAUAUCUGCUCCGUGUGUCUGCAUGCAGACCAAUGCCAUGCCAGAGACAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GGCUCUCUGCCUGUGUU--| C U A A AU G UGAAAC
GG CUGU UGCAGA ACAC GA GGGUAU AGUG U
CC GACG ACGUCU UGUG CU UCUAUA UUAC U
CACAGAGACCGUACCGUAA^ A U G C CG G UUUUAC
. 110 100 90 80 70 60 |
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| Deep sequencing |
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14) |
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Tissue expression
|
|
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| Mature sequence |
Xla-Novel-4_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AAACACAGAAUGGGUAUGAGUG -22
Get sequence
|
|---|
| Star sequence |
Xla-Novel-4_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- UUGAUAUCUGCUCCGUGUGUCU -60
Get sequence
|
|---|
