MirGeneDB ID | Xla-Novel-5 |
---|---|
Family name | XLA-NOVEL-5 (all species) |
Seed | UGUGGUA |
Species | African clawed frog (Xenopus laevis) |
MiRBase ID | |
Paralogues | |
Orthologues | |
Node of Origin (locus) | X. laevis |
Node of Origin (family) | X. laevis |
Genome context (GCF_001663975.1_XLA_v2) |
NC_030726.1: 136117914-136117974 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | UGAAUUAAAGCAAGAUUUGCUUGUGUAUUCCUCUCCCGUGUUUUCCACCUGUAAACAGUUAAACACAUCAUGUGGUACACACGGGAGAGGGAGACGCAGGCAGAAUCCAUCUCUUUGUAUUGet precursor sequence |
Structure | 10 20 30 40 50 UGAAUUAAAGCAAGAUU--| A UUU C UAAACAGU UGCUUGUGU UUCCUCUCCCGUGU CCAC UG \ ACGGACGCA AGGGAGAGGGCACA GGUG AC U UUAUGUUUCUCUACCUAAG^ G CAU U UACACAAA . 110 100 90 80 70 |
Deep sequencing | |
3' NTU | No |
Motifs | CNNC at 3p(+17) |
Star sequence | Xla-Novel-5_5p* |
mirBase accession | None |
Sequence |
0- CUCUCCCGUGUUUUCCACCUGU -22
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|
Mature sequence | Xla-Novel-5_3p |
mirBase accession | None |
Sequence |
39- AUGUGGUACACACGGGAGAGGG -61
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