MirGeneDB ID | Xla-Novel-6 |
---|---|
Family name | XLA-NOVEL-6 (all species) |
Seed | UCAGCUC |
Species | African clawed frog (Xenopus laevis) |
MiRBase ID | |
Paralogues | |
Orthologues | |
Node of Origin (locus) | X. laevis |
Node of Origin (family) | X. laevis |
Genome context (GCF_001663975.1_XLA_v2) |
NC_030728.1: 132156645-132156701 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | UCUUUGUUCUGGGACCUCUUGGAGUGAAACUGGGUGAGUUUAAGAGUUGUAGAUAUUUUGGAUGUUUCAGCUCUUUAACUUUCCAGGUUCUUCCCAAGCCAUUACCCCGGUUUAUACGet precursor sequence |
Structure | 10 20 30 40 50 UCUUUGUUCUGGGACCU--| AGU A U U U UAUUU CUUGG GAA CUGGG GAGUU AAGAGUUG AGA \ GAACC CUU GACCU UUCAA UUCUCGAC UUU U CAUAUUUGGCCCCAUUACC^ CUU G - U - GUAGG 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | No |
Motifs | CNNC at 3p(+17) |
Star sequence | Xla-Novel-6_5p* |
mirBase accession | None |
Sequence |
0- UGGGUGAGUUUAAGAGUUGUAGA -23
Get sequence
|
Mature sequence | Xla-Novel-6_3p |
mirBase accession | None |
Sequence |
35- UUCAGCUCUUUAACUUUCCAGG -57
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