MirGeneDB ID | Xla-Novel-8 |
---|---|
Family name | XLA-NOVEL-8 (all species) |
Seed | GAACACA |
Species | African clawed frog (Xenopus laevis) |
MiRBase ID | |
Paralogues | |
Orthologues | |
Node of Origin (locus) | X. laevis |
Node of Origin (family) | X. laevis |
Genome context (GCF_001663975.1_XLA_v2) |
NC_030735.1: 119656848-119656905 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | AGCAGGGAGAAAUGCUGGAUGUUACUGGGCAGAACACACUGCAGACUCAUAGUUUCAUUCAGCUCCAUGGUCUGUAUUGUGUCUCAGCCUGUAAAUCUAAGUCUGAUGUGUCAGGAAAGet precursor sequence |
Structure | 10 20 30 40 50 AGCAGGGAGAAAUGCUG----| G U A - C U AGUUUCA GAU UUAC GGGC GA ACACA UGCAGAC CAU U CUA AAUG UCCG CU UGUGU AUGUCUG GUA U AAAGGACUGUGUAGUCUGAAU^ - - A C U - CCUCGAC 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | No |
Motifs | No |
Mature sequence | Xla-Novel-8_5p |
mirBase accession | None |
Sequence |
0- AGAACACACUGCAGACUCAUAG -22
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|
Star sequence | Xla-Novel-8_3p* |
mirBase accession | None |
Sequence |
36- AUGGUCUGUAUUGUGUCUCAGC -58
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|