| MirGeneDB ID | Xla-Novel-8 |
|---|
| Family name |
XLA-NOVEL-8 (all species) |
|---|
| Seed |
GAACACA |
|---|
| Species |
African clawed frog (Xenopus laevis) |
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| MiRBase ID |
|
|---|
| Paralogues |
|
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| Orthologues |
|
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| Node of Origin (locus) |
X. laevis
|
|---|
| Node of Origin (family) |
X. laevis
|
|---|
Genome context
(GCF_001663975.1_XLA_v2) |
NC_030735.1: 119656848-119656905 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AGCAGGGAGAAAUGCUGGAUGUUACUGGGCAGAACACACUGCAGACUCAUAGUUUCAUUCAGCUCCAUGGUCUGUAUUGUGUCUCAGCCUGUAAAUCUAAGUCUGAUGUGUCAGGAAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGCAGGGAGAAAUGCUG----| G U A - C U AGUUUCA
GAU UUAC GGGC GA ACACA UGCAGAC CAU U
CUA AAUG UCCG CU UGUGU AUGUCUG GUA U
AAAGGACUGUGUAGUCUGAAU^ - - A C U - CCUCGAC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Xla-Novel-8_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AGAACACACUGCAGACUCAUAG -22
Get sequence
|
|---|
| Star sequence |
Xla-Novel-8_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- AUGGUCUGUAUUGUGUCUCAGC -58
Get sequence
|
|---|
