| MirGeneDB ID | Xla-Novel-9 |
|---|
| Family name |
XLA-NOVEL-9 (all species) |
|---|
| Seed |
CUGCAGA |
|---|
| Species |
African clawed frog (Xenopus laevis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
X. laevis
|
|---|
| Node of Origin (family) |
X. laevis
|
|---|
Genome context
(GCF_001663975.1_XLA_v2) |
NC_030736.1: 6649903-6649962 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AUUUGGGUUUGACAAUGGUGCAGGUAGCGUCUCCUGAUGCUUCUCUUCUCAGUUCUAUCCCUGGAACUCUGCAGAGAAGUGUCGGAAGACUCCACCGGCACAGAGCAACAGGUGGCGCUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AUUUGGGUUUGACAAUG--| A AGC C UCU UUCUAUC
GUGC GGU GUCU CUGAUGCUUCUCU CAG C
CACG CCA CAGA GGCUGUGAAGAGA GUC C
CUCGCGGUGGACAACGAGA^ G CCU A C-- UCAAGGU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Xla-Novel-9_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CUCCUGAUGCUUCUCUUCUCAGU -23
Get sequence
|
|---|
| Mature sequence |
Xla-Novel-9_3p |
| mirBase accession | None |
|---|
| Sequence |
37- UCUGCAGAGAAGUGUCGGAAGAC -60
Get sequence
|
|---|
