MirGeneDB ID | Xla-Novel-9 |
---|---|
Family name | XLA-NOVEL-9 (all species) |
Seed | CUGCAGA |
Species | African clawed frog (Xenopus laevis) |
MiRBase ID | |
Paralogues | |
Orthologues | |
Node of Origin (locus) | X. laevis |
Node of Origin (family) | X. laevis |
Genome context (GCF_001663975.1_XLA_v2) |
NC_030736.1: 6649903-6649962 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | AUUUGGGUUUGACAAUGGUGCAGGUAGCGUCUCCUGAUGCUUCUCUUCUCAGUUCUAUCCCUGGAACUCUGCAGAGAAGUGUCGGAAGACUCCACCGGCACAGAGCAACAGGUGGCGCUCGet precursor sequence |
Structure | 10 20 30 40 50 60 AUUUGGGUUUGACAAUG--| A AGC C UCU UUCUAUC GUGC GGU GUCU CUGAUGCUUCUCU CAG C CACG CCA CAGA GGCUGUGAAGAGA GUC C CUCGCGGUGGACAACGAGA^ G CCU A C-- UCAAGGU . 110 100 90 80 70 |
Deep sequencing | |
3' NTU | No |
Motifs | CNNC at 3p(+17) |
Star sequence | Xla-Novel-9_5p* |
mirBase accession | None |
Sequence |
0- CUCCUGAUGCUUCUCUUCUCAGU -23
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|
Mature sequence | Xla-Novel-9_3p |
mirBase accession | None |
Sequence |
37- UCUGCAGAGAAGUGUCGGAAGAC -60
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