| MirGeneDB ID | Xtr-Mir-12479 |
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| Family name |
MIR-12479 (all species) |
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| Seed |
CCACUAG |
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| Species |
Tropical clawed frog (Xenopus tropicalis) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Xla-Mir-12479-P1
Xla-Mir-12479-P2
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| Node of Origin (locus) |
Xenopus
|
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| Node of Origin (family) |
Xenopus
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Genome context
(xenTro9_add) |
chr7: 62852538-62852594 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
ACUUGCUUACCUCUUGCAGUAACUAAGCUCACCACUAGAGGCUGCUGCACUGCAGGCUACAAAUGCUGCAGCGCCACCUGGUGGAGAGUUGAGGCUGCCAGUUUCAGAGGGAAAAGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
ACUUGCUUACCUCUUGCA- A- A A A-| U CU AGGCU
GUA CU AGCUC CCACUAG GGC GCUGCA GC \
CGU GA UUGAG GGUGGUC CCG CGACGU CG A
AGAAAAGGGAGACUUUGAC CG G A CA^ - -- UAAAC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
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| Mature sequence |
Xtr-Mir-12479_5p |
| mirBase accession | None |
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| Sequence |
0- ACCACUAGAGGCUGCUGCACUGC -23
Get sequence
|
|---|
| Star sequence |
Xtr-Mir-12479_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- CUGCAGCGCCACCUGGUGGAGA -57
Get sequence
|
|---|
