MirGeneDB ID | Xtr-Mir-12482 |
Family name |
MIR-12482 (all species) |
Seed |
UUCCUGC |
Species |
Tropical clawed frog (Xenopus tropicalis) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Xla-Mir-12482-P1
Xla-Mir-12482-P2
|
Node of Origin (locus) |
Xenopus
|
Node of Origin (family) |
Xenopus
|
Genome context (xenTro9_add) |
chr1: 98200860-98200928 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUACUGCUUAAGAUAUUUUGGGGUUUUGCAGGAUUUCACAUUGCAGGAAGCAAUGGGCUCCAAUAUAUAAAAUAAUGUUUCCUGCAGUGUGACAUCCUGCAAGAUCCUGAGUAAGCUUCAUCUUUGCUG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUACUGCUUAAGAUAUU--|UG U AUGGGCUCCAA
U GGGUUUUGCAGGAU UCACAUUGCAGGAAGCA \
A CCUAGAACGUCCUA AGUGUGACGUCCUUUGU U
GUCGUUUCUACUUCGAAUG^GU C AAUAAAAUAUA
120 110 100 90 80 70 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Xtr-Mir-12482_5p* |
mirBase accession | None |
Sequence |
0- GGAUUUCACAUUGCAGGAAGCA -22
Get sequence
|
Mature sequence |
Xtr-Mir-12482_3p |
mirBase accession | None |
Sequence |
47- UUUCCUGCAGUGUGACAUCCUG -69
Get sequence
|