| MirGeneDB ID | Xtr-Mir-12485 |
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| Family name |
MIR-12485 (all species) |
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| Seed |
GAUCGGA |
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| Species |
Tropical clawed frog (Xenopus tropicalis) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Xla-Mir-12485-P1
Xla-Mir-12485-P2
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| Node of Origin (locus) |
Xenopus
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| Node of Origin (family) |
Xenopus
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Genome context
(xenTro9_add) |
chr7: 23094426-23094488 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GCUACCUAAUCGAUCAGCCAGCAGGCCGAUUGAUCGGAUCUUGUACAAUUUGACCACACAGGUGGAUGUCCAAAUUGUACCGAUCCCAUCUUUUGGCCUGUGGACCAGACAAUCGGAUUGCUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GCUACCUAAUCGAUCAG---| G UU C UU ACCACACA
CCA CAGGCCGA GAU GGAUC GUACAAUUUG G
GGU GUCCGGUU CUA CCUAG CAUGUUAAAC G
AUCGUUAGGCUAACAGACCA^ - UU C C- CUGUAGGU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | No |
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Tissue expression
|
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| Mature sequence |
Xtr-Mir-12485_5p |
| mirBase accession | None |
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| Sequence |
0- UGAUCGGAUCUUGUACAAUUUGA -23
Get sequence
|
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| Star sequence |
Xtr-Mir-12485_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
41- AAAUUGUACCGAUCCCAUCUUU -63
Get sequence
|
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