| MirGeneDB ID | Xtr-Mir-12486 |
|---|
| Family name |
MIR-12486 (all species) |
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| Seed |
UGCUGAC |
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| Species |
Tropical clawed frog (Xenopus tropicalis) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Xla-Mir-12486-P1
Xla-Mir-12486-P2
|
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| Node of Origin (locus) |
Xenopus
|
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| Node of Origin (family) |
Xenopus
|
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Genome context
(xenTro9_add) |
chr1: 78077403-78077458 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CUUGAAGCGUCUAUCUGUAUUAACCCCUUGAGUGUCAGAGGGGUAAACAAUGCAUCACUGAGUAUUGCUGACACCUCUGGCAUUAAUGGUGUUAUUAAACUGCAUUCAAUCAACAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUUGAAGCGUCUAUCUG--| U C UUG G AAA CAUC
UA UAAC CC AGUGUCAGAGG GU CAAUG A
AU AUUG GG UUACGGUCUCC CA GUUAU C
CACAACUAACUUACGUCAA^ U U UAA A GUC GAGU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Xtr-Mir-12486_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGUGUCAGAGGGGUAAACAAUG -22
Get sequence
|
|---|
| Mature sequence |
Xtr-Mir-12486_3p |
| mirBase accession | None |
|---|
| Sequence |
34- UUGCUGACACCUCUGGCAUUAA -56
Get sequence
|
|---|
