| MirGeneDB ID | Xtr-Novel-5 |
|---|
| Family name |
XEN-NOVEL-5 (all species) |
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| Seed |
UCCCCUU |
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| Species |
Tropical clawed frog (Xenopus tropicalis) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Xla-Novel-5-P1
Xla-Novel-5-P2
|
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| Node of Origin (locus) |
Xenopus
|
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| Node of Origin (family) |
Xenopus
|
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Genome context
(xenTro9_add) |
chr8: 75923129-75923189 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AAGUUUUUCUGAUGCUUGUGUAGUGGUGCACUCCCCUUUCAUUAGGAGCGUGCUGUACUGUGUAAUUGGGCACGUCUAAAGGAAGGGAGCACAUCGCUAGUACUAAUCUCAUUGCAUGCUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AAGUUUUUCUGAUGCUU- -| CA C A GA GUACUG
GUG UAGUGGUG CUCCC UUUC UUAG GCGUGCU U
CAU AUCGCUAC GAGGG AAGG AAUC UGCACGG G
CUCGUACGUUACUCUAAU G^ AC - A -- GUUAAU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
|
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| Mature sequence |
Xtr-Novel-5_5p |
| mirBase accession | None |
|---|
| Sequence |
0- CUCCCCUUUCAUUAGGAGCGUGCU -24
Get sequence
|
|---|
| Star sequence |
Xtr-Novel-5_3p* |
| mirBase accession | None |
|---|
| Sequence |
40- CACGUCUAAAGGAAGGGAGCA -61
Get sequence
|
|---|
