| MirGeneDB ID | Xtr-Novel-9 |
|---|
| Family name |
XEN-NOVEL-9 (all species) |
|---|
| Seed |
AGGGAUC |
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| Species |
Tropical clawed frog (Xenopus tropicalis) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Xla-Novel-9-P1-v1
Xla-Novel-9-P1-v2
Xla-Novel-9-P2-v1
Xla-Novel-9-P2-v2
|
|---|
| Node of Origin (locus) |
Xenopus
|
|---|
| Node of Origin (family) |
Xenopus
|
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Genome context
(xenTro9_add) |
chr6: 71836723-71836780 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UUGGCUGGAUCGCCGUUUCUCUGUCUCACACAGGGAUCUCGUGAUGCCGGCAAUGAAAGGCAUGUUCCGGCAUUGCGCAAUCCCAGUGUGAUGCAGGGGAUUUCAACUUGAUGAAUCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUGGCUGGAUCGCCGUU--| C A CU UG CAAUGAA
UCUCUGU UCACAC GGGAU CG AUGCCGG A
GGGGACG AGUGUG CCCUA GC UACGGCC G
CCUAAGUAGUUCAACUUUA^ U A AC GU UUGUACG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
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| Mature sequence |
Xtr-Novel-9_5p |
| mirBase accession | None |
|---|
| Sequence |
0- CAGGGAUCUCGUGAUGCCGGCA -22
Get sequence
|
|---|
| Star sequence |
Xtr-Novel-9_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- CCGGCAUUGCGCAAUCCCAGUG -58
Get sequence
|
|---|
