Mir
Gene
DB
2.1
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36 microRNA genes with seed CCACAGG
Sort by genome coordinates
Motifs
MirGeneDB ID
MiRBase ID
Family
Seed
5p accession
3p accession
Chromosome
Start
End
Strand
Node of origin (locus)
Node of origin (family)
3' NTU
UG
UGUG
▼
CNNC
Gja-Mir-140-P1-v1
None
MIR-140
CCACAGG
None
None
NW_015163100.1
1368704
1368765
+
Gnathostomata
Vertebrata
No
1
1
Tni-Mir-140-P1-v1
tni-mir-140
MIR-140
CCACAGG
MIMAT0003025
None
13
1172500
1172561
+
Gnathostomata
Vertebrata
No
1
1
Gmo-Mir-140-P1-v1
gmo-mir-140
MIR-140
CCACAGG
MIMAT0044299
MIMAT0044300
GeneScaffold_497
168347
168408
-
Gnathostomata
Vertebrata
No
1
1
Mal-Mir-140-P1-v1
None
MIR-140
CCACAGG
None
None
KV885061.1
918110
918171
-
Gnathostomata
Vertebrata
No
1
1
Spt-Mir-140-P1
None
MIR-140
CCACAGG
None
None
QEPC01000412.1
2298530
2298591
-
Gnathostomata
Vertebrata
Unknown
1
Lch-Mir-140-P1
None
MIR-140
CCACAGG
None
None
JH127961.1
491090
491151
+
Gnathostomata
Vertebrata
Unknown
Pma-Mir-140-o3
None
MIR-140
CCACAGG
None
None
PIZI01000964.1
4177
4240
+
P. marinus
Vertebrata
No
1
Tgu-Mir-140-P1-v1
tgu-mir-140
MIR-140
CCACAGG
MIMAT0014557
MIMAT0014642
11
11586546
11586607
+
Gnathostomata
Vertebrata
No
1
Sto-Mir-140-P1-v1
None
MIR-140
CCACAGG
None
None
BFAA01000092.1
252505
252566
+
Gnathostomata
Vertebrata
No
Hsa-Mir-140-P1-v1
hsa-mir-140
MIR-140
CCACAGG
MIMAT0000431
MIMAT0004597
chr16
69933103
69933164
+
Gnathostomata
Vertebrata
No
1
Ami-Mir-140-P1-v1
ami-mir-140
MIR-140
CCACAGG
MIMAT0038160
MIMAT0038161
NW_017709930.1
237938
237999
+
Gnathostomata
Vertebrata
No
Cmi-Mir-140-P1-v1
None
MIR-140
CCACAGG
None
None
KI635866.1
3585272
3585333
-
Gnathostomata
Vertebrata
No
1
Mml-Mir-140-P1-v1
mml-mir-140
MIR-140
CCACAGG
MIMAT0006197
MIMAT0006198
chr20
54375584
54375645
+
Gnathostomata
Vertebrata
No
1
Cpi-Mir-140-P1-v1
cpi-mir-140
MIR-140
CCACAGG
MIMAT0037764
MIMAT0037765
JH584945
517644
517705
-
Gnathostomata
Vertebrata
No
1
Mmu-Mir-140-P1-v1
mmu-mir-140
MIR-140
CCACAGG
MIMAT0000151
MIMAT0000152
chr8
107551249
107551310
+
Gnathostomata
Vertebrata
No
1
Aca-Mir-140-P1-v1
aca-mir-140
MIR-140
CCACAGG
MIMAT0021765
MIMAT0021766
GL343643.1
205834
205895
+
Gnathostomata
Vertebrata
No
1
Rno-Mir-140-P1-v1
rno-mir-140
MIR-140
CCACAGG
MIMAT0000573
MIMAT0000574
chr19
39608972
39609033
+
Gnathostomata
Vertebrata
No
1
Cpo-Mir-140-P1-v1
cpo-mir-140
MIR-140
CCACAGG
MIMAT0047004
MIMAT0047005
scaffold_22
6810958
6811019
-
Gnathostomata
Vertebrata
No
1
Ocu-Mir-140-P1-v1
ocu-mir-140
MIR-140
CCACAGG
MIMAT0048241
MIMAT0048242
chr5
25337165
25337226
+
Gnathostomata
Vertebrata
No
1
Cfa-Mir-140-P1-v1
cfa-mir-140
MIR-140
CCACAGG
None
MIMAT0006689
chr5
79814255
79814316
-
Gnathostomata
Vertebrata
No
1
Bta-Mir-140-P1-v1
bta-mir-140
MIR-140
CCACAGG
None
MIMAT0003789
NC_037345.1
36962029
36962090
+
Gnathostomata
Vertebrata
No
1
Xtr-Mir-140-P1-v1
xtr-mir-140
MIR-140
CCACAGG
MIMAT0003601
None
chr4
62459953
62460014
+
Gnathostomata
Vertebrata
No
1
Dno-Mir-140-P1-v1
dno-mir-140
MIR-140
CCACAGG
MIMAT0047653
MIMAT0047654
JH569970
120638
120699
-
Gnathostomata
Vertebrata
No
1
Mun-Mir-140-P1-v1
None
MIR-140
CCACAGG
None
None
140-P1-v1_LR594636.1:360792593-360792854
101
162
+
Gnathostomata
Vertebrata
No
Ete-Mir-140-P1-v1
None
MIR-140
CCACAGG
None
None
JH980312
15985822
15985883
-
Gnathostomata
Vertebrata
No
1
Sha-Mir-140-P1-v1
sha-mir-140
MIR-140
CCACAGG
None
MIMAT0022778
GL834769.1
1909560
1909621
+
Gnathostomata
Vertebrata
No
Mdo-Mir-140-P1-v1
mdo-mir-140
MIR-140
CCACAGG
MIMAT0012745
MIMAT0026937
1
699870962
699871023
+
Gnathostomata
Vertebrata
No
Oan-Mir-140-P1-v1
oan-mir-140
MIR-140
CCACAGG
MIMAT0006812
MIMAT0006813
NC_041738.1
39776980
39777041
-
Gnathostomata
Vertebrata
No
Gga-Mir-140-P1-v1
gga-mir-140
MIR-140
CCACAGG
MIMAT0001159
MIMAT0003722
11
19068678
19068739
+
Gnathostomata
Vertebrata
No
1
Dre-Mir-140-P1-v1
dre-mir-140
MIR-140
CCACAGG
MIMAT0001836
MIMAT0003159
chr25
34791384
34791445
+
Gnathostomata
Vertebrata
No
1
Cli-Mir-140-P1-v1
cli-mir-140
MIR-140
CCACAGG
MIMAT0038527
MIMAT0038528
scaffold123
5480472
5480533
-
Gnathostomata
Vertebrata
No
1
Loc-Mir-140-P1-v1
None
MIR-140
CCACAGG
None
None
LG23
5630089
5630150
-
Gnathostomata
Vertebrata
No
Ebu-Mir-140-P3-v1
None
MIR-140
AGUGGUU
None
None
FYBX02009326.1
825017
825077
-
E. burgeri
Vertebrata
No
1
1
Ebu-Mir-140-P4-v1
None
MIR-140
CCACAGG
None
None
FYBX02008842.1
1778408
1778469
-
E. burgeri
Vertebrata
No
1
Xla-Mir-140-P1a-v1
xla-mir-140-1
MIR-140
CCACAGG
MIMAT0046452
MIMAT0046453
NC_030730.1
49672494
49672555
-
X. laevis
Vertebrata
No
1
Xla-Mir-140-P1b-v1
xla-mir-140-2
MIR-140
CCACAGG
MIMAT0046452
MIMAT0046453
NC_030731.1
41460369
41460430
-
X. laevis
Vertebrata
No
1
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