MirGeneDB ID | Aae-Mir-11900 |
Family name |
MIR-11900 (all species) |
Seed |
UUUUUUU |
Species |
Yellow fever mosquito (Aedes aegypti) |
MiRBase ID |
aae-mir-11900
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
A. aegypti
|
Node of Origin (family) |
A. aegypti
|
Genome context (Aaeg_L3) |
supercont1.245: 1561006-1561085 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGCUGAACCCGGAGGAUCAGCGUGGAAUGGUAAAAUUACGUUGAAAAAUCGUCUCCCUCAAAAAAUGAAACCUGAGACUAACAGGAGAUUUUUUUGACUGUAAUUUUAUAGUAUACGGAGUUCUUCGCUUCGACGCUGAU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGCUGAACCCGGAGGAUCAG---| GAAUG - UG UC CCCUCAAAAAAUGAA
CGUG GUAAAAUUAC GU AAAAA GUCU \
GCAU UAUUUUAAUG CA UUUUU UAGA A
UAGUCGCAGCUUCGCUUCUUGAG^ AUGA- U GU -- GGACAAUCAGAGUCC
. 130 120 110 100 90 80 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Aae-Mir-11900_5p* |
mirBase accession | None |
Sequence |
0- UAAAAUUACGUUGAAAAAUCGUCU -24
Get sequence
|
Mature sequence |
Aae-Mir-11900_3p |
mirBase accession | MIMAT0045999 |
Sequence |
57- AUUUUUUUGACUGUAAUUUUAUA -80
Get sequence
|