| MirGeneDB ID | Aca-Mir-5396-P1 |
|---|
| Family name |
MIR-5396 (all species) |
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| Seed |
CGCACAA |
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| Species |
Green anole lizard (Anolis carolinensis) |
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| MiRBase ID |
aca-mir-5396a
|
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| Paralogues |
Aca-Mir-5396-P2
|
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| Orthologues |
|
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| Node of Origin (locus) |
A. carolinensis
|
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| Node of Origin (family) |
A. carolinensis
|
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Genome context
(anoCar2) |
1: 69318558-69318617 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GUCUGUAAUGACAGAAUGAGGUGAGAGUGUCCGCACAACCAGCAAGAAGAUGGGAAGAUCUAGCCACUCCUUCUUGUUGGUCAUGUUGGCAUACAGUUUAAAUCUCAGAUGCAAUCAGCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GUCUGUAAUGACAGAAU----| G AGA C CA AUGGGAAGA
GAG UG GUGUC GCA ACCAGCAAGAAG U
UUU AC UACGG UGU UGGUUGUUCUUC C
ACGACUAACGUAGACUCUAAA^ G A-- U AC CUCACCGAU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
|
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| Mature sequence |
Aca-Mir-5396-P1_5p |
| mirBase accession | MIMAT0022003 |
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| Sequence |
0- CCGCACAACCAGCAAGAAGAU -21
Get sequence
|
|---|
| Star sequence |
Aca-Mir-5396-P1_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
39- CUUCUUGUUGGUCAUGUUGGC -60
Get sequence
|
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