| MirGeneDB ID | Aca-Mir-5396-P2 |
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| Family name |
MIR-5396 (all species) |
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| Seed |
CACACAA |
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| Species |
Green anole lizard (Anolis carolinensis) |
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| MiRBase ID |
aca-mir-5396b
|
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| Paralogues |
Aca-Mir-5396-P1
|
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| Orthologues |
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| Node of Origin (locus) |
A. carolinensis
|
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| Node of Origin (family) |
A. carolinensis
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Genome context
(anoCar2) |
1: 213792664-213792723 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AGUUGCAUCUAUGAGCCCAGAAUGGGGCAUCCACACAACCAGCAAGAAGGAAAUAAGAUUAAUCCCUUUCUUCUUGCUGUUUGUGCAGGUGCCUCAUCCUGACAUCAACCAAAGUGACUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGUUGCAUCUAUGAGCC--| A CA C AUAAGA
CAG AUGGGGCAUC CACAA CAGCAAGAAGGAA U
GUC UACUCCGUGG GUGUU GUCGUUCUUCUUU U
GUCAGUGAAACCAACUACA^ C AC U CCCUAA
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Aca-Mir-5396-P2_5p |
| mirBase accession | MIMAT0037580 |
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| Sequence |
0- CCACACAACCAGCAAGAAGGAA -22
Get sequence
|
|---|
| Star sequence |
Aca-Mir-5396-P2_3p* |
| mirBase accession | MIMAT0037581 |
|---|
| Sequence |
38- UCUUCUUGCUGUUUGUGCAGGU -60
Get sequence
|
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