| MirGeneDB ID | Aca-Mir-5405 |
|---|
| Family name |
MIR-5405 (all species) |
|---|
| Seed |
GUUUUAU |
|---|
| Species |
Green anole lizard (Anolis carolinensis) |
|---|
| MiRBase ID |
aca-mir-5405
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
A. carolinensis
|
|---|
| Node of Origin (family) |
A. carolinensis
|
|---|
Genome context
(anoCar2) |
GL343207.1: 3269097-3269153 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UUGGAGUUUACAAAUGCAAGUGGACAAUAUUGUUUUAUUUGCCUUCCUGUUUAGAAAUCAGCAGAACAGGGAGACAUCUAGGACAAGGAUGCCAGGCUUAAAUCUACAGUAUUUUCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUGGAGUUUACAAAUGC- --| A AUA UU C AGAAA
AAGU GG CA UUGUUUUA UG CUUCCUGUUU \
UUCG CC GU AACAGGAU AC GAGGGACAAG U
CCUUUUAUGACAUCUAAA GA^ - AGG CU A ACGAC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Aca-Mir-5405_5p |
| mirBase accession | MIMAT0022018 |
|---|
| Sequence |
0- UGUUUUAUUUGCCUUCCUGUUU -22
Get sequence
|
|---|
| Star sequence |
Aca-Mir-5405_3p* |
| mirBase accession | MIMAT0022019 |
|---|
| Sequence |
35- ACAGGGAGACAUCUAGGACAAG -57
Get sequence
|
|---|
