| MirGeneDB ID | Aca-Mir-5412 |
|---|
| Family name |
MIR-5412 (all species) |
|---|
| Seed |
AGGGUCC |
|---|
| Species |
Green anole lizard (Anolis carolinensis) |
|---|
| MiRBase ID |
aca-mir-5412
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
A. carolinensis
|
|---|
| Node of Origin (family) |
A. carolinensis
|
|---|
Genome context
(anoCar2) |
GL343214.1: 285133-285189 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UAAUCAGUGGAGAAAGGAGGAGUGGCAGAGAAGGGUCCAGGUUUUUUUCUUGUGAAUUUAAUUAAAGGAAAAUUUCUGGGUGCUUUUCUGCUGUACCCAUCUACACACAGAGAAAUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UAAUCAGUGGAGAAAGGA--| A UG G UU GUGAAU
GG G GCAGAGAAG GUCCAGG UUUUUCUU \
CC U CGUCUUUUC UGGGUCU AAAAGGAA U
GUAAAGAGACACACAUCUAC^ A GU G UU AUUAAU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Aca-Mir-5412_5p |
| mirBase accession | MIMAT0022030 |
|---|
| Sequence |
0- AAGGGUCCAGGUUUUUUUCUU -21
Get sequence
|
|---|
| Star sequence |
Aca-Mir-5412_3p* |
| mirBase accession | MIMAT0022031 |
|---|
| Sequence |
36- GGAAAAUUUCUGGGUGCUUUU -57
Get sequence
|
|---|
