| MirGeneDB ID | Aga-Mir-1890 |
|---|
| Family name |
MIR-1890 (all species) |
|---|
| Seed |
GAAAUCU |
|---|
| Species |
African malaria mosquito (Anopheles gambiae) |
|---|
| MiRBase ID |
aga-mir-1890
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Aae-Mir-1890
|
|---|
| Node of Origin (locus) |
Culicidae
|
|---|
| Node of Origin (family) |
Culicidae
|
|---|
Genome context
(GCF_943734735.2_idAnoGambNW_F1_1_genomic) |
NC_064602.1: 20853711-20853777 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AAGCACUUCCCGAUUGUCGUGUGGACGAUCAGAGCUAAUUGGAGUAUUUCUUGAGGAAUAUUUUUGACAAGCUCAUGAAAUCUUUGAUUAGGUCUGGUUGUUCGGUACGACCAGCGCUCUUCAAACG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AAGCACUUCCCGAUUGU- -| G UG U U AGGAAUAUU
CGUG UGGACGAUCAGA CUAAU GAG AUUUC UG U
GCAU GCUUGUUGGUCU GAUUA UUC UAAAG AC U
GCAAACUUCUCGCGACCA G^ G GU - U UCGAACAGU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
| Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
| |
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Aga-Mir-1890_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGAGCUAAUUGGAGUAUUUCUUG -23
Get sequence
|
|---|
| Mature sequence |
Aga-Mir-1890_3p |
| mirBase accession | MIMAT0007861 |
|---|
| Sequence |
45- UGAAAUCUUUGAUUAGGUCUGG -67
Get sequence
|
|---|
