MirGeneDB ID | Aga-Mir-1890 |
Family name |
MIR-1890 (all species) |
Seed |
GAAAUCU |
Species |
African malaria mosquito (Anopheles gambiae) |
MiRBase ID |
aga-mir-1890
|
Paralogues |
|
Orthologues |
Aae-Mir-1890
|
Node of Origin (locus) |
Culicidae
|
Node of Origin (family) |
Culicidae
|
Genome context (GCF_943734735.2_idAnoGambNW_F1_1_genomic) |
NC_064602.1: 20853711-20853777 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAGCACUUCCCGAUUGUCGUGUGGACGAUCAGAGCUAAUUGGAGUAUUUCUUGAGGAAUAUUUUUGACAAGCUCAUGAAAUCUUUGAUUAGGUCUGGUUGUUCGGUACGACCAGCGCUCUUCAAACG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AAGCACUUCCCGAUUGU- -| G UG U U AGGAAUAUU
CGUG UGGACGAUCAGA CUAAU GAG AUUUC UG U
GCAU GCUUGUUGGUCU GAUUA UUC UAAAG AC U
GCAAACUUCUCGCGACCA G^ G GU - U UCGAACAGU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
Ab |
Ab |
He |
He |
Mi |
Mi |
Ov |
Ov |
Ov |
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Star sequence |
Aga-Mir-1890_5p* |
mirBase accession | None |
Sequence |
0- AGAGCUAAUUGGAGUAUUUCUUG -23
Get sequence
|
Mature sequence |
Aga-Mir-1890_3p |
mirBase accession | MIMAT0007861 |
Sequence |
45- UGAAAUCUUUGAUUAGGUCUGG -67
Get sequence
|