MirGeneDB ID | Aae-Mir-1890 |
Family name |
MIR-1890 (all species) |
Seed |
GAAAUCU |
Species |
Yellow fever mosquito (Aedes aegypti) |
MiRBase ID |
aae-mir-1890
|
Paralogues |
|
Orthologues |
Aga-Mir-1890
|
Node of Origin (locus) |
Culicidae
|
Node of Origin (family) |
Culicidae
|
Genome context (Aaeg_L3) |
supercont1.204: 1733314-1733377 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGCAGUGAUCAAGGAUAUCGACAUACGGCUAGAGCUAAUUGGAGAGUUCUUGAAUAGUGUUGUGAACCUUCAUGAAAUCUUUGAUUAGGUCUGGUCGUGGUGGUUUAUCAACGCGUUGGAUUCU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGCAGUGAUCAAGGAUAUCGA- -| G UG G U AAUAGUGU
CA UACGGCUAGA CUAAU GAGA UUC UG U
GU GUGCUGGUCU GAUUA UUCU AAG AC G
UCUUAGGUUGCGCAACUAUUUG G^ G GU A U UUCCAAGU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Aae-Mir-1890_5p* |
mirBase accession | None |
Sequence |
0- AGAGCUAAUUGGAGAGUUCUUG -22
Get sequence
|
Mature sequence |
Aae-Mir-1890_3p |
mirBase accession | MIMAT0014247 |
Sequence |
42- UGAAAUCUUUGAUUAGGUCUGG -64
Get sequence
|