| MirGeneDB ID | Aqu-Mir-2015 |
|---|
| Family name |
MIR-2015 (all species) |
|---|
| Seed |
CAUGUAU |
|---|
| Species |
Amphimedon (Amphimedon queenslandica) |
|---|
| MiRBase ID |
aqu-mir-2015
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Emu-Mir-2015
|
|---|
| Node of Origin (locus) |
Demospongiae
|
|---|
| Node of Origin (family) |
Demospongiae
|
|---|
Genome context
(GCF_000090795.1_v1.0_SPONGE) |
NW_003546311.1: 293397-293474 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GAGGAUGUUUCAGUUUCUCAUGAUGUAUUGUCAUGUAUUGUGGAGGGGAGAGACUUUAAGGAGUAGCUUUACUGUCUCCAUGAGCUCACCUCUCCAUCAUGCAUGACAAAACUAGUGAGAUGAUGACAAAGAGCUACA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GAGGAUGUUUCAGUUUC---| GAU A U A GACUUUAAGGAGUAGC
UCAU GU UUGUCAUGUAU GUGGAGGGG GA U
AGUG CA AACAGUACGUA UACCUCUCC CU U
ACAUCGAGAAACAGUAGUAG^ AU- A C A CGAGUACCUCUGUCAU
130 120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Aqu-Mir-2015_5p |
| mirBase accession | MIMAT0009688 |
|---|
| Sequence |
0- UCAUGUAUUGUGGAGGGGAGA -21
Get sequence
|
|---|
| Star sequence |
Aqu-Mir-2015_3p* |
| mirBase accession | MIMAT0009689 |
|---|
| Sequence |
57- ACCUCUCCAUCAUGCAUGACA -78
Get sequence
|
|---|
