MirGeneDB 3.0

MirGeneDB ID

Aqu-Mir-2015

Family name MIR-2015 (all species)
Seed CAUGUAU
Species Amphimedon (Amphimedon queenslandica)
MiRBase ID aqu-mir-2015
Paralogues
Orthologues Emu-Mir-2015 
Node of Origin (locus) Demospongiae
Node of Origin (family) Demospongiae
Genome context
(GCF_000090795.1_v1.0_SPONGE)
NW_003546311.1: 293397-293474 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GAGGAUGUUUCAGUUUCUCAUGAUGUAUUGUCAUGUAUUGUGGAGGGGAGAGACUUUAAGGAGUAGCUUUACUGUCUCCAUGAGCUCACCUCUCCAUCAUGCAUGACAAAACUAGUGAGAUGAUGACAAAGAGCUACA
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Structure
        10           20        30        40        50        60        
GAGGAUGUUUCAGUUUC---|   GAU  A           U         A  GACUUUAAGGAGUAGC 
                    UCAU   GU UUGUCAUGUAU GUGGAGGGG GA                U
                    AGUG   CA AACAGUACGUA UACCUCUCC CU                U
ACAUCGAGAAACAGUAGUAG^   AU-  A           C         A  CGAGUACCUCUGUCAU 
      130       120        110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Ad Co Ju Pr
Mature sequence

Aqu-Mir-2015_5p

mirBase accessionMIMAT0009688
Sequence
0- UCAUGUAUUGUGGAGGGGAGA -21
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Star sequence

Aqu-Mir-2015_3p*

mirBase accessionMIMAT0009689
Sequence
57- ACCUCUCCAUCAUGCAUGACA -78
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