| MirGeneDB ID | Aqu-Mir-2017 |
|---|
| Family name |
MIR-2017 (all species) |
|---|
| Seed |
ACCUGUG |
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| Species |
Amphimedon (Amphimedon queenslandica) |
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| MiRBase ID |
aqu-mir-2017
|
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| Paralogues |
|
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| Orthologues |
Emu-Mir-2017-P1
Emu-Mir-2017-P2
|
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| Node of Origin (locus) |
Demospongiae
|
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| Node of Origin (family) |
Demospongiae
|
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Genome context
(GCF_000090795.1_v1.0_SPONGE) |
NW_003546545.1: 71864-71947 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
ACAGCAAGAGAAGGAAUGGAUGAGGGAUUGAGUACACGGGGUAUGGGUAGUGCUUCCAGCAAGGAUUAUAAUUAUAAAGUCCAUUUAAGCACUACCUGUGCACCUGUGUGCCCAAACCUAUCCAUAUCGAAGCAACUCACAAGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60 70
ACAGCAAGAGAAGGAAU----| G GA A - GCUUCCAGCAAGGAUUAUA
GGAU AGG UUG GUACACGGG GUAUGGGUAGU \
CCUA UCC AAC CGUGUGUCC CGUGUCCAUCA A
AGAACACUCAACGAAGCUAUA^ - A- C A CGAAUUUACCUGAAAUAUU
140 130 120 110 100 90 80 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
|
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| Star sequence |
Aqu-Mir-2017_5p* |
| mirBase accession | MIMAT0009692 |
|---|
| Sequence |
0- AGUACACGGGGUAUGGGUAGU -21
Get sequence
|
|---|
| Mature sequence |
Aqu-Mir-2017_3p |
| mirBase accession | MIMAT0009693 |
|---|
| Sequence |
62- UACCUGUGCACCUGUGUGCCCA -84
Get sequence
|
|---|
