| MirGeneDB ID | Emu-Mir-2017-P1 |
|---|
| Family name |
MIR-2017 (all species) |
|---|
| Seed |
CCUGUGC |
|---|
| Species |
Muellers freshwater sponge (Ephydatia muelleri) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Emu-Mir-2017-P2
|
|---|
| Orthologues |
Aqu-Mir-2017
|
|---|
| Node of Origin (locus) |
E. muelleri
|
|---|
| Node of Origin (family) |
Demospongiae
|
|---|
Genome context
(GCA_013339895_Emu) |
JABACO010000010.1: 607107-607177 [+]
|
|---|
Precursor
(pre-Mir +30nt flank) |
CUGGCCUCCUUGUGGUGUGCACUGGUAAUGAGCACACAGGGCAGAGGUCGUGAUAGAAGGCUCGACAGAGAGCCGUCACUACCUGUGCACCUGUGUGCCCAUUAGCCGGCGCCAUGGGAUUGGACCCUUGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CUGGCCUCCUUGUGGUGU- A - A -| G C GAUAGAAGGCUC
GC CUGG UAAUG GCACACAGG GCA AGGU GU G
CG GGCC AUUAC CGUGUGUCC CGU UCCA CA A
GGUUCCCAGGUUAGGGUAC C G C A^ G U CUGCCGAGAGAC
. 120 110 100 90 80 70 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Emu-Mir-2017-P1_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- AGCACACAGGGCAGAGGUCGU -21
Get sequence
|
|---|
| Mature sequence |
Emu-Mir-2017-P1_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
50- ACCUGUGCACCUGUGUGCCCA -71
Get sequence
|
|---|
