| MirGeneDB ID | Asu-Mir-5350-P5 |
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| Family name |
MIR-5350 (all species) |
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| Seed |
UUGGCAC |
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| Species |
Large roundworm (Ascaris suum) |
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| MiRBase ID |
asu-mir-5351
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| Paralogues |
Asu-Mir-5350-P1
Asu-Mir-5350-P2
Asu-Mir-5350-P3
Asu-Mir-5350-P4
Asu-Mir-5350-P6
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| Orthologues |
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| Node of Origin (locus) |
A.suum
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| Node of Origin (family) |
A.suum
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Genome context
(ASU_PRJNA80881_plustraces) |
Scaffold95: 1540197-1540253 [+]
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Precursor
(pre-Mir +30nt flank) |
UUAUUGCGAAGCUGAAGAAGCGUACCAAGUCAGGUUUUACUAAUGACCAAAUUGUUUCAAGCGAAUUUGGCACAUGUAAUACCUGCCUUGGUUGCUACUUACCUUGCUUCACAACAA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UUAUUGCGAAGCUGAAGA---| U U U UAA A GUUU
AGCG ACCAAG CAGGU UUAC UG CCAAAUU C
UCGU UGGUUC GUCCA AAUG AC GGUUUAA A
AACAACACUUCGUUCCAUUCA^ - C U UAC - GCGA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Ce |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
La |
Ov |
Se |
Sp |
Te |
Zy |
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| Star sequence |
Asu-Mir-5350-P5_5p* |
| mirBase accession | MIMAT0021560 |
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| Sequence |
0- CAGGUUUUACUAAUGACCAAAUU -23
Get sequence
|
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| Mature sequence |
Asu-Mir-5350-P5_3p |
| mirBase accession | MIMAT0021561 |
|---|
| Sequence |
35- UUUGGCACAUGUAAUACCUGCC -57
Get sequence
|
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