MirGeneDB 3.0
MirGeneDB ID

Asu-Mir-5350-P1

Family name MIR-5350 (all species)
Seed UUGGCAC
Species Large roundworm (Ascaris suum)
MiRBase ID asu-mir-5350a
Paralogues Asu-Mir-5350-P2  Asu-Mir-5350-P3  Asu-Mir-5350-P4  Asu-Mir-5350-P5  Asu-Mir-5350-P6 
Orthologues
Node of Origin (locus) A.suum
Node of Origin (family) A.suum
Genome context
(ASU_PRJNA80881_plustraces)		 Scaffold730: 214863-214919 [+]
Clustered miRNAs
(< 50kb from Mir-5350-P1)		 Mir-5350-P1 Scaffold730: 214863-214919 [+]
Mir-36-o30 Scaffold730: 215044-215101 [+]
Precursor
(pre-Mir +30nt flank)
UUGUUCUUCGAAGGACAGGGCCGCCGGAGGAGUUUCUCAGGACUGCUAAAUUGUGAAUCGGCUAAUUUGGCACGCCUGAAAAACUACUCUUGUAGGUCCUCAGACGUAAAGCUCAGU
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Structure
        10         20         30        40        50        
UUGUUCUUCGAAGGACA-     -| C    G     C     AC         GUGAA 
                  GGGCC GC GGAG AGUUU UCAGG  UGCUAAAUU     \
                  CCUGG UG UCUC UCAAA AGUCC  ACGGUUUAA     U
UGACUCGAAAUGCAGACU     A^ U    A     A     GC         UCGGC 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Ce Em Em Em Em Em Em Em Em Em Em La Ov Se Sp Te Zy
Star sequence

Asu-Mir-5350-P1_5p*
mirBase accessionMIMAT0021552
Sequence 
0- AGUUUCUCAGGACUGCUAAAUU -22
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Mature sequence

Asu-Mir-5350-P1_3p
mirBase accessionMIMAT0021553
Sequence 
35- UUUGGCACGCCUGAAAAACUAC -57
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