MirGeneDB 3.0
MirGeneDB ID

Asu-Mir-36-o30

Family name MIR-36 (all species)
Seed CACCGGG
Species Large roundworm (Ascaris suum)
MiRBase ID asu-mir-36d
Paralogues Asu-Mir-36-o27  Asu-Mir-36-o28  Asu-Mir-36-o29-v1  Asu-Mir-36-o29-v2  Asu-Mir-36-o31  Asu-Mir-36-o32 
Orthologues Agr-Mir-36  Bge-Mir-36  Cte-Mir-36  Dgr-Mir-36  Dlo-Mir-36  Dma-Mir-36  Dpu-Mir-36  Eba-Mir-36  Gsp-Mir-36  Isc-Mir-36  Lhy-Mir-36  Llo-Mir-36  Mgi-Mir-36  Mom-Mir-36  Npo-Mir-36  Ofu-Mir-36  Pau-Mir-36  Pcr-Mir-36  Pdu-Mir-36  Pve-Mir-36  Rph-Mir-36  Snu-Mir-36  Tca-Mir-36  Tur-Mir-36-P30  War-Mir-36 
Node of Origin (locus) A.suum
Node of Origin (family) Protostomia
Genome context
(ASU_PRJNA80881_plustraces)		 Scaffold730: 215044-215101 [+]
Clustered miRNAs
(< 50kb from Mir-36-o30)		 Mir-5350-P1 Scaffold730: 214863-214919 [+]
Mir-36-o30 Scaffold730: 215044-215101 [+]
Precursor
(pre-Mir +30nt flank)
CAAUCCGGUAGCUGAAUGGAUCUCGCGUGGCAGGGAUUCCGCUUUUGGUGACGUGGAGAAGAAUCUUCACCGGGCAAGAAUCCCUGUCAUGUUGCCUUCCGUAUUCACGCCAGUAUUG
Get precursor sequence
Structure
        10         20         30        40         50         
CAAUCCGGUAGCUGAAU-   UCUC-               C-|  UU      CGUGGAG 
                  GGA     GCGUGGCAGGGAUUC  GCU  UGGUGA       \
                  CCU     UGUACUGUCCCUAAG  CGG  GCCACU       A
GUUAUGACCGCACUUAUG   UCCGU               AA^  --      UCUAAGA 
      110       100        90        80          70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Ce Em Em Em Em Em Em Em Em Em Em La Ov Se Sp Te Zy
Star sequence

Asu-Mir-36-o30_5p*
mirBase accessionMIMAT0021445
Sequence 
0- CAGGGAUUCCGCUUUUGGUGACG -23
Get sequence
Mature sequence

Asu-Mir-36-o30_3p
mirBase accessionMIMAT0021446
Sequence 
36- UCACCGGGCAAGAAUCCCUGUC -58
Get sequence