Mir-36

MirGeneDB ID

Rph-Mir-36

Family name

MIR-36 (all species)

Seed

CACCGGG

Species

Japanese carpet shell (Ruditapes philippinarum)

MiRBase ID

Paralogues

Orthologues

Agr-Mir-36 Asu-Mir-36-o27 Asu-Mir-36-o28 Asu-Mir-36-o29-v1 Asu-Mir-36-o29-v2 Asu-Mir-36-o30 Asu-Mir-36-o31 Asu-Mir-36-o32 Ava-Mir-36-P26a Ava-Mir-36-P26b Ava-Mir-36-P27 Ava-Mir-36-P28a Ava-Mir-36-P28b Ava-Mir-36-P29a Ava-Mir-36-P29b Bge-Mir-36 Bko-Mir-36-P16a Bko-Mir-36-P16b Bko-Mir-36-P18a Bko-Mir-36-P18b Bpl-Mir-36-P16 Bpl-Mir-36-P17 Bpl-Mir-36-P18 Cbr-Mir-36-o1 Cbr-Mir-36-o2 Cbr-Mir-36-o3 Cbr-Mir-36-o4 Cbr-Mir-36-o5 Cbr-Mir-36-o6 Cbr-Mir-36-o7a Cbr-Mir-36-o7b Cbr-Mir-36-o7c Cbr-Mir-36-o8a Cbr-Mir-36-o8b Cbr-Mir-36-o8c Cbr-Mir-36-o9 Cbr-Mir-36-o10 Cbr-Mir-36-o11 Cbr-Mir-36-o12 Cbr-Mir-36-o13 Cbr-Mir-36-o14 Cbr-Mir-36-o15 Cbr-Mir-36-o16 Cbr-Mir-36-o17 Cbr-Mir-36-o18 Cbr-Mir-36-o19 Cbr-Mir-36-o20 Cbr-Mir-36-o21 Cbr-Mir-36-o22 Cbr-Mir-36-o23 Cbr-Mir-36-o24 Cbr-Mir-36-o25 Cbr-Mir-36-o26 Cel-Mir-36-P1 Cel-Mir-36-P2 Cel-Mir-36-P3 Cel-Mir-36-P4 Cel-Mir-36-P5 Cel-Mir-36-P6 Cel-Mir-36-P7 Cel-Mir-36-P8 Cte-Mir-36 Dgr-Mir-36 Dlo-Mir-36 Dma-Mir-36 Dpu-Mir-36 Eba-Mir-36 Efe-Mir-36-P9 Efe-Mir-36-P10 Egr-Mir-36-o36 Egr-Mir-36-o37 Esc-Mir-36-P14 Esc-Mir-36-P15 Gsa-Mir-36-o38 Gsa-Mir-36-o39 Gsp-Mir-36 Isc-Mir-36 Lhy-Mir-36 Llo-Mir-36 Lpo-Mir-36-P11 Lpo-Mir-36-P12 Lpo-Mir-36-P13 Mgi-Mir-36 Mom-Mir-36 Npo-Mir-36 Obi-Mir-36-P14 Obi-Mir-36-P15 Ofu-Mir-36 Ovu-Mir-36-P14 Ovu-Mir-36-P15 Pau-Mir-36 Pca-Mir-36-P23 Pca-Mir-36-P24 Pca-Mir-36-P25 Pcr-Mir-36 Pdu-Mir-36 Pve-Mir-36 Sma-Mir-36-o33 Sma-Mir-36-o34 Sma-Mir-36-o35 Sme-Mir-36-P19 Sme-Mir-36-P20a Sme-Mir-36-P20b Sne-Mir-36-P21 Sne-Mir-36-P22 Snu-Mir-36 Tca-Mir-36 Tur-Mir-36-P30 Tur-Mir-36-P31 Tur-Mir-36-P32 Tur-Mir-36-P33 Tur-Mir-36-P34 Tur-Mir-36-P35 Tur-Mir-36-P36 War-Mir-36

Node of Origin (locus)

Protostomia

Node of Origin (family)

Protostomia

Genome context
(Ruditapes_GCA_009026015)

CM018535.1: 14872558-14872617 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UAUCCGUUUACAUCAAAGUUGCGCAUGUGCAGUGAAUGGUUGCCCGGUUAGGUGCUACAUUUUAUCAUCACCGGGUAAACAUUCAUCCGCAUAUGUGACAACACUGAACAACAAACCUUG

Get precursor sequence

Structure

        10         20         30         40        50         
UAUCCGUUUACAUCAAA-    -         A-|      G         UAGGUGCUAC 
                  GUUG CGCAUGUGC  GUGAAUG UUGCCCGGU          \
                  CAAC GUGUAUACG  UACUUAC AAUGGGCCA          A
GUUCCAAACAACAAGUCA    A         CC^      A         CUACUAUUUU 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

Tissue expression

Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr

Star sequence

Rph-Mir-36_5p* (predicted)

mirBase accession

None

Sequence

0- AGUGAAUGGUUGCCCGGUUAGG -22

Get sequence

Mature sequence

Rph-Mir-36_3p (predicted)

mirBase accession

None

Sequence

37- UCACCGGGUAAACAUUCAUCCGC -60

Get sequence