Mir-36-o25

MirGeneDB ID

Cbr-Mir-36-o25

Family name

MIR-36 (all species)

Seed

CACCGGG

Species

Roundworm (Caenorhabditis briggsae)

MiRBase ID

cbr-mir-42

Paralogues

Cbr-Mir-36-o1 Cbr-Mir-36-o2 Cbr-Mir-36-o3 Cbr-Mir-36-o4 Cbr-Mir-36-o5 Cbr-Mir-36-o6 Cbr-Mir-36-o7a Cbr-Mir-36-o7b Cbr-Mir-36-o7c Cbr-Mir-36-o8a Cbr-Mir-36-o8b Cbr-Mir-36-o8c Cbr-Mir-36-o9 Cbr-Mir-36-o10 Cbr-Mir-36-o11 Cbr-Mir-36-o12 Cbr-Mir-36-o13 Cbr-Mir-36-o14 Cbr-Mir-36-o15 Cbr-Mir-36-o16 Cbr-Mir-36-o17 Cbr-Mir-36-o18 Cbr-Mir-36-o19 Cbr-Mir-36-o20 Cbr-Mir-36-o21 Cbr-Mir-36-o22 Cbr-Mir-36-o23 Cbr-Mir-36-o24 Cbr-Mir-36-o26

Orthologues

Agr-Mir-36 Bge-Mir-36 Cte-Mir-36 Dgr-Mir-36 Dlo-Mir-36 Dma-Mir-36 Dpu-Mir-36 Eba-Mir-36 Gsp-Mir-36 Isc-Mir-36 Lhy-Mir-36 Llo-Mir-36 Mgi-Mir-36 Mom-Mir-36 Npo-Mir-36 Ofu-Mir-36 Pau-Mir-36 Pca-Mir-36-P25 Pcr-Mir-36 Pdu-Mir-36 Pve-Mir-36 Rph-Mir-36 Snu-Mir-36 Tca-Mir-36 War-Mir-36

Node of Origin (locus)

C. briggsae

Node of Origin (family)

Protostomia

Genome context
(CB4)

II: 8891373-8891435 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-36-o25)

Mir-279-P10 II: 8891068-8891135 [-] Ensembl
Mir-2-o4 II: 8891220-8891282 [-] Ensembl
Mir-36-o25 II: 8891373-8891435 [-] Ensembl
Mir-279-P11a II: 8900359-8900424 [-] Ensembl
Mir-279-P11b II: 8903154-8903219 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

AUAUUCCACCUAUAACCCUUGUCGGACCUUUGUGGGUGUUCGCCUUUUCGGUGAAGUUACUGAAUGCUUCUUCACCGGGUUAACAUCUACAGAGGUCCUAAAGGGUUCCAUGACCCAUGACCC

Get precursor sequence

Structure

        10           20        30        40        50        60   
AUAUUCCACCUAUAACC---|  GUC                 C   UUUU        UUACUG 
                    CUU   GGACCUUUGUGGGUGUU GCC    CGGUGAAG      \
                    GAA   CCUGGAGACAUCUACAA UGG    GCCACUUC      A
CCCAGUACCCAGUACCUUGG^  AU-                 U   ----        UUCGUA 
 120       110       100         90        80            70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ea	Ma	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Yo	Yo

Star sequence

Cbr-Mir-36-o25_5p*

mirBase accession

None

Sequence

0- UGUGGGUGUUCGCCUUUUCGGUGAAG -26

Get sequence

Mature sequence

Cbr-Mir-36-o25_3p

mirBase accession

MIMAT0000467

Sequence

41- UCACCGGGUUAACAUCUACAGA -63

Get sequence