Mir-36-o22

MirGeneDB ID

Cbr-Mir-36-o22

Family name

MIR-36 (all species)

Seed

CACCGGG

Species

Roundworm (Caenorhabditis briggsae)

MiRBase ID

cbr-mir-40

Paralogues

Cbr-Mir-36-o1 Cbr-Mir-36-o2 Cbr-Mir-36-o3 Cbr-Mir-36-o4 Cbr-Mir-36-o5 Cbr-Mir-36-o6 Cbr-Mir-36-o7a Cbr-Mir-36-o7b Cbr-Mir-36-o7c Cbr-Mir-36-o8a Cbr-Mir-36-o8b Cbr-Mir-36-o8c Cbr-Mir-36-o9 Cbr-Mir-36-o10 Cbr-Mir-36-o11 Cbr-Mir-36-o12 Cbr-Mir-36-o13 Cbr-Mir-36-o14 Cbr-Mir-36-o15 Cbr-Mir-36-o16 Cbr-Mir-36-o17 Cbr-Mir-36-o18 Cbr-Mir-36-o19 Cbr-Mir-36-o20 Cbr-Mir-36-o21 Cbr-Mir-36-o23 Cbr-Mir-36-o24 Cbr-Mir-36-o25 Cbr-Mir-36-o26

Orthologues

Agr-Mir-36 Bge-Mir-36 Cte-Mir-36 Dgr-Mir-36 Dlo-Mir-36 Dma-Mir-36 Dpu-Mir-36 Eba-Mir-36 Gsp-Mir-36 Isc-Mir-36 Lhy-Mir-36 Llo-Mir-36 Mgi-Mir-36 Mom-Mir-36 Npo-Mir-36 Ofu-Mir-36 Pau-Mir-36 Pcr-Mir-36 Pdu-Mir-36 Pve-Mir-36 Rph-Mir-36 Sne-Mir-36-P22 Snu-Mir-36 Tca-Mir-36 War-Mir-36

Node of Origin (locus)

C. briggsae

Node of Origin (family)

Protostomia

Genome context
(CB4)

II: 8377946-8378013 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-36-o22)

Mir-36-o19 II: 8377574-8377633 [+] Ensembl
Mir-36-o20 II: 8377669-8377736 [+] Ensembl
Mir-36-o21 II: 8377847-8377908 [+] Ensembl
Mir-36-o22 II: 8377946-8378013 [+] Ensembl
Mir-36-o24 II: 8378068-8378133 [+] Ensembl
Mir-36-o13 II: 8378188-8378247 [+] Ensembl
Mir-36-o23 II: 8378304-8378369 [+] Ensembl
Mir-36-o1 II: 8378426-8378486 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

AAGCAUCUCUGUAUCCCCUGCCCUCACCCCAGCGGGUUUUCAUCGCAGUGAUAUGACGCAUUCAAACCAUUUCUUAUCACCGGGUGUCAAUCAGCUAGGGUGUGGGCGCGGGUAUCCACAGAGGUAAG

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Structure

        10          20        30        40        50        60    
AAGCAUCUCUGUAUCCCCU--|   U     C   G    UU    GCA      UGACGCAUUC 
                     GCCC CACCC AGC GGUU  CAUC   GUGAUA          \
                     CGGG GUGGG UCG CUAA  GUGG   CACUAU          A
GAAUGGAGACACCUAUGGGCG^   U     A   A    CU    GC-      UCUUUACCAA 
      120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ea	Ma	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Yo	Yo

Star sequence

Cbr-Mir-36-o22_5p*

mirBase accession

None

Sequence

0- AGCGGGUUUUCAUCGCAGUGAUA -23

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Mature sequence

Cbr-Mir-36-o22_3p

mirBase accession

MIMAT0001317

Sequence

46- UCACCGGGUGUCAAUCAGCUAG -68

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