Mir-36-o5

MirGeneDB ID

Cbr-Mir-36-o5

Family name

MIR-36 (all species)

Seed

CACCGGG

Species

Roundworm (Caenorhabditis briggsae)

MiRBase ID

cbr-mir-35b-4

Paralogues

Cbr-Mir-36-o1 Cbr-Mir-36-o2 Cbr-Mir-36-o3 Cbr-Mir-36-o4 Cbr-Mir-36-o6 Cbr-Mir-36-o7a Cbr-Mir-36-o7b Cbr-Mir-36-o7c Cbr-Mir-36-o8a Cbr-Mir-36-o8b Cbr-Mir-36-o8c Cbr-Mir-36-o9 Cbr-Mir-36-o10 Cbr-Mir-36-o11 Cbr-Mir-36-o12 Cbr-Mir-36-o13 Cbr-Mir-36-o14 Cbr-Mir-36-o15 Cbr-Mir-36-o16 Cbr-Mir-36-o17 Cbr-Mir-36-o18 Cbr-Mir-36-o19 Cbr-Mir-36-o20 Cbr-Mir-36-o21 Cbr-Mir-36-o22 Cbr-Mir-36-o23 Cbr-Mir-36-o24 Cbr-Mir-36-o25 Cbr-Mir-36-o26

Orthologues

Agr-Mir-36 Bge-Mir-36 Cel-Mir-36-P5 Cte-Mir-36 Dgr-Mir-36 Dlo-Mir-36 Dma-Mir-36 Dpu-Mir-36 Eba-Mir-36 Gsp-Mir-36 Isc-Mir-36 Lhy-Mir-36 Llo-Mir-36 Mgi-Mir-36 Mom-Mir-36 Npo-Mir-36 Ofu-Mir-36 Pau-Mir-36 Pcr-Mir-36 Pdu-Mir-36 Pve-Mir-36 Rph-Mir-36 Snu-Mir-36 Tca-Mir-36 War-Mir-36

Node of Origin (locus)

C. briggsae

Node of Origin (family)

Protostomia

Genome context
(CB4)

X: 15372356-15372417 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-36-o5)

Mir-36-o11 X: 15370852-15370914 [+] Ensembl
Mir-36-o15 X: 15371011-15371072 [+] Ensembl
Mir-36-o2 X: 15371151-15371212 [+] Ensembl
Mir-36-o14 X: 15371290-15371352 [+] Ensembl
Mir-36-o3 X: 15372046-15372108 [+] Ensembl
Mir-36-o4 X: 15372216-15372277 [+] Ensembl
Mir-36-o5 X: 15372356-15372417 [+] Ensembl
Mir-36-o6 X: 15372549-15372611 [+] Ensembl
Mir-36-o7c X: 15372700-15372762 [+] Ensembl
Mir-36-o8c X: 15372864-15372926 [+] Ensembl
Mir-36-o7b X: 15373015-15373077 [+] Ensembl
Mir-36-o8b X: 15373179-15373241 [+] Ensembl
Mir-36-o7a X: 15373330-15373392 [+] Ensembl
Mir-36-o9 X: 15373482-15373545 [+] Ensembl
Mir-36-o8a X: 15373647-15373709 [+] Ensembl
Mir-36-o10 X: 15373788-15373849 [+] Ensembl
Mir-36-o18 X: 15374070-15374131 [+] Ensembl
Mir-36-o16 X: 15374480-15374545 [+] Ensembl
Mir-36-o17 X: 15374624-15374686 [+] Ensembl
Mir-36-o12 X: 15375015-15375077 [+] Ensembl
Mir-36-o26 X: 15378480-15378543 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

CUAUUAUUUUCAUGGUCUGGGUCGGACCUUUGCCAAUUUUCUCCGCGGUGAUACUCCAAUGCGACGAUUAUCACCGGGUGAAAACUGGUAGAGGUCCGAGCCAGUCAGACCAUCCCUUUCCA

Get precursor sequence

Structure

        10          20        30        40        50        60 
CUAUUAUUUUCAUGGUC--|  G              A     U  G        CUCCAAU 
                   UGG UCGGACCUUUGCCA UUUUC CC CGGUGAUA       \
                   ACC AGCCUGGAGAUGGU AAAAG GG GCCACUAU       G
ACCUUUCCCUACCAGACUG^  G              C     U  -        UAGCAGC 
120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ea	Ma	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Yo	Yo

Star sequence

Cbr-Mir-36-o5_5p*

mirBase accession

None

Sequence

0- UGCCAAUUUUCUCCGCGGUGAUA -23

Get sequence

Mature sequence

Cbr-Mir-36-o5_3p

mirBase accession

MIMAT0011483

Sequence

40- UCACCGGGUGAAAACUGGUAGA -62

Get sequence