Mir-36-o23

MirGeneDB ID

Cbr-Mir-36-o23

Family name

MIR-36 (all species)

Seed

CACCGGG

Species

Roundworm (Caenorhabditis briggsae)

MiRBase ID

cbr-mir-41a

Paralogues

Cbr-Mir-36-o1 Cbr-Mir-36-o2 Cbr-Mir-36-o3 Cbr-Mir-36-o4 Cbr-Mir-36-o5 Cbr-Mir-36-o6 Cbr-Mir-36-o7a Cbr-Mir-36-o7b Cbr-Mir-36-o7c Cbr-Mir-36-o8a Cbr-Mir-36-o8b Cbr-Mir-36-o8c Cbr-Mir-36-o9 Cbr-Mir-36-o10 Cbr-Mir-36-o11 Cbr-Mir-36-o12 Cbr-Mir-36-o13 Cbr-Mir-36-o14 Cbr-Mir-36-o15 Cbr-Mir-36-o16 Cbr-Mir-36-o17 Cbr-Mir-36-o18 Cbr-Mir-36-o19 Cbr-Mir-36-o20 Cbr-Mir-36-o21 Cbr-Mir-36-o22 Cbr-Mir-36-o24 Cbr-Mir-36-o25 Cbr-Mir-36-o26

Orthologues

Agr-Mir-36 Bge-Mir-36 Cte-Mir-36 Dgr-Mir-36 Dlo-Mir-36 Dma-Mir-36 Dpu-Mir-36 Eba-Mir-36 Gsp-Mir-36 Isc-Mir-36 Lhy-Mir-36 Llo-Mir-36 Mgi-Mir-36 Mom-Mir-36 Npo-Mir-36 Ofu-Mir-36 Pau-Mir-36 Pca-Mir-36-P23 Pcr-Mir-36 Pdu-Mir-36 Pve-Mir-36 Rph-Mir-36 Snu-Mir-36 Tca-Mir-36 War-Mir-36

Node of Origin (locus)

C. briggsae

Node of Origin (family)

Protostomia

Genome context
(CB4)

II: 8378304-8378369 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-36-o23)

Mir-36-o19 II: 8377574-8377633 [+] Ensembl
Mir-36-o20 II: 8377669-8377736 [+] Ensembl
Mir-36-o21 II: 8377847-8377908 [+] Ensembl
Mir-36-o22 II: 8377946-8378013 [+] Ensembl
Mir-36-o24 II: 8378068-8378133 [+] Ensembl
Mir-36-o13 II: 8378188-8378247 [+] Ensembl
Mir-36-o23 II: 8378304-8378369 [+] Ensembl
Mir-36-o1 II: 8378426-8378486 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UGUUGCAUGAAAGCAGGUCCCAAAUGCCUUGGUGGUUUUUCGCCGUAGUGAUACAACAUCGAAGCCAUACGAUAUCACCGGGUGAAAAACUCCCAAGGUCGGGACAUUUUUAUUUGUUCUUGUCGU

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Structure

        10             20        30        40        50        60   
UGUUGCAUGAAAGCAGG-----|   AAAU       UG          GUA      CAACAUCGA 
                      UCCC    GCCUUGG  GUUUUUCGCC   GUGAUA         \
                      AGGG    UGGAACC  CAAAAAGUGG   CACUAU         A
UGCUGUUCUUGUUUAUUUUUAC^   C---       CU          GC-      AGCAUACCG 
    120       110       100           90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ea	Ma	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Yo	Yo

Star sequence

Cbr-Mir-36-o23_5p*

mirBase accession

None

Sequence

0- GGUGGUUUUUCGCCGUAGUGAUA -23

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Mature sequence

Cbr-Mir-36-o23_3p

mirBase accession

MIMAT0001318

Sequence

44- UCACCGGGUGAAAAACUCCCAA -66

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