Mir-36

MirGeneDB ID

Dpu-Mir-36

Family name

MIR-36 (all species)

Seed

CACCGGG

Species

Common water flea (Daphnia pulex)

MiRBase ID

Paralogues

Orthologues

Agr-Mir-36 Asu-Mir-36-o27 Asu-Mir-36-o28 Asu-Mir-36-o29-v1 Asu-Mir-36-o29-v2 Asu-Mir-36-o30 Asu-Mir-36-o31 Asu-Mir-36-o32 Ava-Mir-36-P26a Ava-Mir-36-P26b Ava-Mir-36-P27 Ava-Mir-36-P28a Ava-Mir-36-P28b Ava-Mir-36-P29a Ava-Mir-36-P29b Bge-Mir-36 Bko-Mir-36-P16a Bko-Mir-36-P16b Bko-Mir-36-P18a Bko-Mir-36-P18b Bpl-Mir-36-P16 Bpl-Mir-36-P17 Bpl-Mir-36-P18 Cbr-Mir-36-o1 Cbr-Mir-36-o2 Cbr-Mir-36-o3 Cbr-Mir-36-o4 Cbr-Mir-36-o5 Cbr-Mir-36-o6 Cbr-Mir-36-o7a Cbr-Mir-36-o7b Cbr-Mir-36-o7c Cbr-Mir-36-o8a Cbr-Mir-36-o8b Cbr-Mir-36-o8c Cbr-Mir-36-o9 Cbr-Mir-36-o10 Cbr-Mir-36-o11 Cbr-Mir-36-o12 Cbr-Mir-36-o13 Cbr-Mir-36-o14 Cbr-Mir-36-o15 Cbr-Mir-36-o16 Cbr-Mir-36-o17 Cbr-Mir-36-o18 Cbr-Mir-36-o19 Cbr-Mir-36-o20 Cbr-Mir-36-o21 Cbr-Mir-36-o22 Cbr-Mir-36-o23 Cbr-Mir-36-o24 Cbr-Mir-36-o25 Cbr-Mir-36-o26 Cel-Mir-36-P1 Cel-Mir-36-P2 Cel-Mir-36-P3 Cel-Mir-36-P4 Cel-Mir-36-P5 Cel-Mir-36-P6 Cel-Mir-36-P7 Cel-Mir-36-P8 Cte-Mir-36 Dgr-Mir-36 Dlo-Mir-36 Dma-Mir-36 Eba-Mir-36 Efe-Mir-36-P9 Efe-Mir-36-P10 Egr-Mir-36-o36 Egr-Mir-36-o37 Esc-Mir-36-P14 Esc-Mir-36-P15 Gsa-Mir-36-o38 Gsa-Mir-36-o39 Gsp-Mir-36 Isc-Mir-36 Lhy-Mir-36 Llo-Mir-36 Lpo-Mir-36-P11 Lpo-Mir-36-P12 Lpo-Mir-36-P13 Mgi-Mir-36 Mom-Mir-36 Npo-Mir-36 Obi-Mir-36-P14 Obi-Mir-36-P15 Ofu-Mir-36 Ovu-Mir-36-P14 Ovu-Mir-36-P15 Pau-Mir-36 Pca-Mir-36-P23 Pca-Mir-36-P24 Pca-Mir-36-P25 Pcr-Mir-36 Pdu-Mir-36 Pve-Mir-36 Rph-Mir-36 Sma-Mir-36-o33 Sma-Mir-36-o34 Sma-Mir-36-o35 Sme-Mir-36-P19 Sme-Mir-36-P20a Sme-Mir-36-P20b Sne-Mir-36-P21 Sne-Mir-36-P22 Snu-Mir-36 Tca-Mir-36 Tur-Mir-36-P30 Tur-Mir-36-P31 Tur-Mir-36-P32 Tur-Mir-36-P33 Tur-Mir-36-P34 Tur-Mir-36-P35 Tur-Mir-36-P36 War-Mir-36

Node of Origin (locus)

Protostomia

Node of Origin (family)

Protostomia

Genome context
(Daphnia_pulex.V1.0)

DAPPUscaffold_32: 68520-68579 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-36)

Mir-965 DAPPUscaffold_32: 27782-27843 [-] Ensembl
Mir-279-P1d DAPPUscaffold_32: 68663-68726 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

UCGUGCAUUCUCCGAGUACUUGGUAUUUAUCGGUGAAUUCGACCGUGGUUUUGUUUCUUUUUCUAACAUCACCGGGUAGAAUUCAUCCAGAAUUAUCAAGUUUCAUACAUCUACUGUAAG

Get precursor sequence

Structure

        10          20        30        40        50          
UCGUGCAUUCUCCGAGU--|       U  AUC         G   G    UU  UUUCUU 
                   ACUUGGUA UU   GGUGAAUUC ACC UGGU  UG      \
                   UGAACUAU AA   CUACUUAAG UGG GCCA  AC      U
GAAUGUCAUCUACAUACUU^       U  GAC         A   -    CU  AAUCUU 
.       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Dpu-Mir-36_5p*

mirBase accession

None

Sequence

0- CGGUGAAUUCGACCGUGGUUUUG -23

Get sequence

Mature sequence

Dpu-Mir-36_3p

mirBase accession

None

Sequence

38- UCACCGGGUAGAAUUCAUCCAG -60

Get sequence