MirGeneDB 3.0

MirGeneDB ID

Sma-Mir-36-o34

Family name MIR-36 (all species)
Seed CACCGGG
Species Blood fluke (Schistosoma mansoni)
MiRBase ID sma-mir-36a
Paralogues Sma-Mir-36-o33  Sma-Mir-36-o35 
Orthologues Agr-Mir-36  Bge-Mir-36  Cte-Mir-36  Dgr-Mir-36  Dlo-Mir-36  Dma-Mir-36  Dpu-Mir-36  Eba-Mir-36  Gsp-Mir-36  Isc-Mir-36  Lhy-Mir-36  Llo-Mir-36  Mgi-Mir-36  Mom-Mir-36  Npo-Mir-36  Ofu-Mir-36  Pau-Mir-36  Pcr-Mir-36  Pdu-Mir-36  Pve-Mir-36  Rph-Mir-36  Snu-Mir-36  Tca-Mir-36  Tur-Mir-36-P34  War-Mir-36 
Node of Origin (locus) S. mansoni
Node of Origin (family) Protostomia
Genome context
(GCA_000237925.5_SM_V9_genomic)
HE601624.3: 72169272-72169343 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-36-o34)
Mir-36-o34 HE601624.3: 72169272-72169343 [-] UCSC Ensembl
Mir-36-o35 HE601624.3: 72204878-72204977 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUAAUAUGAAAAAAGUCUGGUAUAUCUUGUGAAGAGUGCCGACCCGGUUAGCCAUUAGAUUAUUGUUAAAGAAACGUGGCCACCGGGUAGACAUUCAUUCGCAGGAUAUUUCACCAUAAUCAACAGUAAAUU
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Structure
        10          20        30         40        50        60     
UUAAUAUGAAAAAAGUC--   U            -|    CCG       UA   AUUAGAUUAUU 
                   UGG AUAUCUUGUGAA GAGUG   ACCCGGU  GCC           G
                   ACU UAUAGGACGCUU CUUAC   UGGGCCA  CGG           U
UUAAAUGACAACUAAUACC   U            A^    AGA       C-   UGCAAAGAAAU 
130       120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
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Star sequence

Sma-Mir-36-o34_5p*

mirBase accessionMIMAT0032137
Sequence
0- GAAGAGUGCCGACCCGGUUAGCC -23
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Mature sequence

Sma-Mir-36-o34_3p

mirBase accessionMIMAT0025041
Sequence
49- CCACCGGGUAGACAUUCAUUCGC -72
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