Mir-36-o35

MirGeneDB ID

Sma-Mir-36-o35

Family name

MIR-36 (all species)

Seed

CACCGGG

Species

Blood fluke (Schistosoma mansoni)

MiRBase ID

sma-mir-36b

Paralogues

Sma-Mir-36-o33 Sma-Mir-36-o34

Orthologues

Agr-Mir-36 Bge-Mir-36 Cte-Mir-36 Dgr-Mir-36 Dlo-Mir-36 Dma-Mir-36 Dpu-Mir-36 Eba-Mir-36 Gsp-Mir-36 Isc-Mir-36 Lhy-Mir-36 Llo-Mir-36 Mgi-Mir-36 Mom-Mir-36 Npo-Mir-36 Ofu-Mir-36 Pau-Mir-36 Pcr-Mir-36 Pdu-Mir-36 Pve-Mir-36 Rph-Mir-36 Snu-Mir-36 Tca-Mir-36 Tur-Mir-36-P35 War-Mir-36

Node of Origin (locus)

S. mansoni

Node of Origin (family)

Protostomia

Genome context
(GCA_000237925.5_SM_V9_genomic)

HE601624.3: 72204878-72204977 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-36-o35)

Mir-36-o34 HE601624.3: 72169272-72169343 [-] UCSC Ensembl
Mir-36-o35 HE601624.3: 72204878-72204977 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGUAUCGUUCUAAAUAAAAGCAGCAUCUGAAGGGAAUGUCUGUUCGGUUUGUGUCAUCGUGGUUACUUGUUAGGUACUACUUAAUAAUGUAACUAUUUUUCAGUACACCACCGGGUAGACAUUCAUCCGCAGAUGUCUUGCUGUAAACUUCUUUAUAGAC

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Structure

        10        20          30         40        50        60        70         
UGUAUCGUUCUAAAUAAA    --       AAGG-|        UU    UU   UCAUCGUGGUUACUUGUUAGGUACU 
                  AGCA  GCAUCUG     GAAUGUCUG  CGGU  GUG                         A
                  UCGU  UGUAGAC     CUUACAGAU  GCCA  CAC                         C
CAGAUAUUUCUUCAAAUG    UC       GCCUA^        GG    C-   AUGACUUUUUAUCAAUGUAAUAAUU 
.       150       140       130       120       110        100        90        80

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

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Star sequence

Sma-Mir-36-o35_5p*

mirBase accession

MIMAT0033514

Sequence

0- AGGGAAUGUCUGUUCGGUUUGUG -23

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Mature sequence

Sma-Mir-36-o35_3p

mirBase accession

MIMAT0033515

Sequence

77- CCACCGGGUAGACAUUCAUCCGC -100

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