Mir-36-o33

MirGeneDB ID

Sma-Mir-36-o33

Family name

MIR-36 (all species)

Seed

GGGUGGA

Species

Blood fluke (Schistosoma mansoni)

MiRBase ID

sma-mir-8457

Paralogues

Sma-Mir-36-o34 Sma-Mir-36-o35

Orthologues

Agr-Mir-36 Bge-Mir-36 Cte-Mir-36 Dgr-Mir-36 Dlo-Mir-36 Dma-Mir-36 Dpu-Mir-36 Eba-Mir-36 Gsp-Mir-36 Isc-Mir-36 Lhy-Mir-36 Llo-Mir-36 Mgi-Mir-36 Mom-Mir-36 Npo-Mir-36 Ofu-Mir-36 Pau-Mir-36 Pcr-Mir-36 Pdu-Mir-36 Pve-Mir-36 Rph-Mir-36 Snu-Mir-36 Tca-Mir-36 Tur-Mir-36-P33 War-Mir-36

Node of Origin (locus)

S. mansoni

Node of Origin (family)

Protostomia

Genome context
(GCA_000237925.5_SM_V9_genomic)

HE601630.3: 16879209-16879307 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAAAAAGAACGAUAUAAUCAUGCGAGUUUGUGGGUGGAUAUGCUCGGUGGUGUUGUGAAAAAAAAAGAAUUAAAAUUCUCAUAGAGAAAUCUAGUUGAGAAUAUCAUCACCGGGUGUUUUUCACCCUCACGCGCUUGAUAAGUCAUCUUUUGUUAAGAA

Get precursor sequence

Structure

        10            20        30         40        50        60        70        
AAAAAAGAACGAUAUAA----|  U   AGUU  U       U-             UUGUGAAAAAAAAAGAAUUAAAAUU 
                     UCA GCG    UG GGGUGGA  AUGCUCGGUGGUG                         C
                     AGU CGC    AC CCCACUU  UGUGGGCCACUAC                         U
AAGAAUUGUUUUCUACUGAAU^  U   GC--  U       UU             UAUAAGAGUUGAUCUAAAGAGAUAC 
       150       140       130         120       110       100        90        80