MirGeneDB ID | Bko-Mir-36-P16b |
Family name |
MIR-36 (all species) |
Seed |
CACCGGG |
Species |
Monogonont Rotifer 2 (Brachionus koreanus) |
MiRBase ID |
|
Paralogues |
Bko-Mir-36-P16a
Bko-Mir-36-P18a
Bko-Mir-36-P18b
|
Orthologues |
Agr-Mir-36
Bge-Mir-36
Bpl-Mir-36-P16
Cbr-Mir-36-o16
Cte-Mir-36
Dgr-Mir-36
Dlo-Mir-36
Dma-Mir-36
Dpu-Mir-36
Eba-Mir-36
Gsp-Mir-36
Isc-Mir-36
Lhy-Mir-36
Llo-Mir-36
Mgi-Mir-36
Mom-Mir-36
Npo-Mir-36
Ofu-Mir-36
Pau-Mir-36
Pcr-Mir-36
Pdu-Mir-36
Pve-Mir-36
Rph-Mir-36
Snu-Mir-36
Tca-Mir-36
War-Mir-36
|
Node of Origin (locus) |
B. koreanus
|
Node of Origin (family) |
Protostomia
|
Genome context (Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genom) |
PJRA01000493.1: 855453-855508 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AACAGUCAAUUAAUAGGCGCGUAUAUUAGUGUCAAGUGAUGACCCUGGUUAUGAAGUCAACUCAUCACCGGGUCUACACUUGCCACUAAUUUCGCCUUCAAUAAACAUCAAGUCAA
Get precursor sequence
|
Structure | 10 20 30 40 50
AACAGUCAAUUAAUAGGC---| UAU U AU U U AAGU
GCG AUUAGUG CAAGUG GACCC GGU AUG \
CGC UAAUCAC GUUCAC CUGGG CCA UAC C
AACUGAACUACAAAUAACUUC^ UU- C AU - C UCAA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Bko-Mir-36-P16b_5p* |
mirBase accession | None |
Sequence |
0- GUCAAGUGAUGACCCUGGUUAUG -23
Get sequence
|
Mature sequence |
Bko-Mir-36-P16b_3p |
mirBase accession | None |
Sequence |
34- UCACCGGGUCUACACUUGCCAC -56
Get sequence
|