MirGeneDB ID | Bko-Mir-36-P18b |
Family name |
MIR-36 (all species) |
Seed |
CACCGGG |
Species |
Monogonont Rotifer 2 (Brachionus koreanus) |
MiRBase ID |
|
Paralogues |
Bko-Mir-36-P16a
Bko-Mir-36-P16b
Bko-Mir-36-P18a
|
Orthologues |
Agr-Mir-36
Bge-Mir-36
Bpl-Mir-36-P18
Cbr-Mir-36-o18
Cte-Mir-36
Dgr-Mir-36
Dlo-Mir-36
Dma-Mir-36
Dpu-Mir-36
Eba-Mir-36
Gsp-Mir-36
Isc-Mir-36
Lhy-Mir-36
Llo-Mir-36
Mgi-Mir-36
Mom-Mir-36
Npo-Mir-36
Ofu-Mir-36
Pau-Mir-36
Pcr-Mir-36
Pdu-Mir-36
Pve-Mir-36
Rph-Mir-36
Snu-Mir-36
Tca-Mir-36
War-Mir-36
|
Node of Origin (locus) |
B. koreanus
|
Node of Origin (family) |
Protostomia
|
Genome context (Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genom) |
PJRA01000493.1: 855209-855270 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCCUAUUAUGUUCAGUCUUAAUGCUCGUUCAGCAAGUGUAGCCUGAGUUAUGUGGUUUAGCUUUUUCAUCACCGGGUUUUCACACUUGCCAAACGAUAUUGAGUUUUGCCAAUUUCAAUUAA
Get precursor sequence
|
Structure | 10 20 30 40 50
UCCUAUUAUGUUCAGUC--- C CA ---| A U UGGUUU
UUAAUG UCGUU GCAAGUGU AGCCUG GU AUG A
AGUUAU AGCAA CGUUCACA UUGGGC CA UAC G
AAUUAACUUUAACCGUUUUG - AC CUU^ - C UUUUUC
120 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Bko-Mir-36-P18b_5p* |
mirBase accession | None |
Sequence |
0- AGCAAGUGUAGCCUGAGUUAUG -22
Get sequence
|
Mature sequence |
Bko-Mir-36-P18b_3p |
mirBase accession | None |
Sequence |
38- UCACCGGGUUUUCACACUUGCCAA -62
Get sequence
|