MirGeneDB ID | Esc-Mir-36-P15 |
Family name |
MIR-36 (all species) |
Seed |
CACCGGG |
Species |
Hawaiian bobtail squid (Euprymna scolopes) |
MiRBase ID |
|
Paralogues |
Esc-Mir-36-P14
|
Orthologues |
Agr-Mir-36
Bge-Mir-36
Cbr-Mir-36-o15
Cte-Mir-36
Dgr-Mir-36
Dlo-Mir-36
Dma-Mir-36
Dpu-Mir-36
Eba-Mir-36
Gsp-Mir-36
Isc-Mir-36
Lhy-Mir-36
Llo-Mir-36
Mgi-Mir-36
Mom-Mir-36
Npo-Mir-36
Obi-Mir-36-P15
Ofu-Mir-36
Ovu-Mir-36-P15
Pau-Mir-36
Pcr-Mir-36
Pdu-Mir-36
Pve-Mir-36
Rph-Mir-36
Snu-Mir-36
Tca-Mir-36
War-Mir-36
|
Node of Origin (locus) |
Coleoidea
|
Node of Origin (family) |
Protostomia
|
Genome context (GCA_004765925.1_miRNA_LOCI) |
Esc-Mir-36-P15_pre_SRIE01038885.1:240990-241247: 101-158 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCUAGCUGGCAGCAAAAGGAUCUUUCGUUCGAUGAAUUUUAACCCGGCACAUGUGGUUCGAUUGCAUCACCGGGUAAACAUUCAUCUAACGGAUUUUCCACUUAAACACUUCAUAUGG
Get precursor sequence
|
Structure | 10 20 30 40 50
CCUAGCUGGCAGCAAAA--| UCU C U A CAC UGGUU
GGA UUCGUU GAUGAAU UU ACCCGG AUG \
CCU AGGCAA CUACUUA AA UGGGCC UAC C
GGUAUACUUCACAAAUUCA^ UUU U C A AC- GUUAG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Esc-Mir-36-P15_5p* |
mirBase accession | None |
Sequence |
0- GAUGAAUUUUAACCCGGCACAUG -23
Get sequence
|
Mature sequence |
Esc-Mir-36-P15_3p |
mirBase accession | None |
Sequence |
36- UCACCGGGUAAACAUUCAUCUA -58
Get sequence
|