MirGeneDB ID | Obi-Mir-36-P15 |
Family name |
MIR-36 (all species) |
Seed |
CACCGGG |
Species |
California two-spot octopus (Octopus bimaculoides) |
MiRBase ID |
|
Paralogues |
Obi-Mir-36-P14
|
Orthologues |
Agr-Mir-36
Bge-Mir-36
Cbr-Mir-36-o15
Cte-Mir-36
Dgr-Mir-36
Dlo-Mir-36
Dma-Mir-36
Dpu-Mir-36
Eba-Mir-36
Esc-Mir-36-P15
Gsp-Mir-36
Isc-Mir-36
Lhy-Mir-36
Llo-Mir-36
Mgi-Mir-36
Mom-Mir-36
Npo-Mir-36
Ofu-Mir-36
Ovu-Mir-36-P15
Pau-Mir-36
Pcr-Mir-36
Pdu-Mir-36
Pve-Mir-36
Rph-Mir-36
Snu-Mir-36
Tca-Mir-36
War-Mir-36
|
Node of Origin (locus) |
Coleoidea
|
Node of Origin (family) |
Protostomia
|
Genome context (PRJNA270931_OBI) |
KQ419452: 306979-307041 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GAUAGUAUCAUUUUCUAUUGGUUAUCGCUUAGGUGAAGUUCGCCCCGGUCAAUGUAUUUUUGAAAGUCCAUCACCGGGUAAACAUUCAUCUAAAAGAUAAAUCCAAAUUUGCUUCUGUUGAUA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GAUAGUAUCAUUUUCUAU -- GC -| CG C CA UAUUUU
UGG UUAUC UUAGGUGAA GUU CCC GGU AUG U
ACC AAUAG AAUCUACUU CAA GGG CCA UAC G
AUAGUUGUCUUCGUUUAA UA AA A^ AU - C- CUGAAA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Obi-Mir-36-P15_5p* |
mirBase accession | None |
Sequence |
0- AGGUGAAGUUCGCCCCGGUCAAUG -24
Get sequence
|
Mature sequence |
Obi-Mir-36-P15_3p |
mirBase accession | None |
Sequence |
40- UCACCGGGUAAACAUUCAUCUAA -63
Get sequence
|