MirGeneDB 3.0
MirGeneDB ID

Sme-Mir-36-P19

Family name MIR-36 (all species)
Seed CACCGGG
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-36b
Paralogues Sme-Mir-36-P20a  Sme-Mir-36-P20b 
Orthologues Agr-Mir-36  Bge-Mir-36  Cbr-Mir-36-o19  Cte-Mir-36  Dgr-Mir-36  Dlo-Mir-36  Dma-Mir-36  Dpu-Mir-36  Eba-Mir-36  Gsp-Mir-36  Isc-Mir-36  Lhy-Mir-36  Llo-Mir-36  Mgi-Mir-36  Mom-Mir-36  Npo-Mir-36  Ofu-Mir-36  Pau-Mir-36  Pcr-Mir-36  Pdu-Mir-36  Pve-Mir-36  Rph-Mir-36  Snu-Mir-36  Tca-Mir-36  War-Mir-36 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Protostomia
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000045_dd_Smes_g4_45: 2342053-2342111 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-36-P19)		 Let-7-P20b NNSW01000045_dd_Smes_g4_45: 2341596-2341651 [-] UCSC Ensembl
Mir-36-P19 NNSW01000045_dd_Smes_g4_45: 2342053-2342111 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAAAUUUUGUUUUUUAACAGUCUAACUCUGGAUUGAUGUUAUUCGGUAUGAUCUAGAAUAAAAAUUAUCACCGGGUAGACAUUAAUCAUGCAGUUAGAGUCUGUAGUCCUCAUGUUUAU
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Structure
        10        20         30         40          50        
UAAAUUUUGUUUUUUAACAG-       CUG-          -       -|   UCUAGA 
                     UCUAACU    GAUUGAUGUU AUUCGGU AUGA      \
                     AGAUUGA    CUAAUUACAG UGGGCCA UAUU      A
UAUUUGUACUCCUGAUGUCUG       CGUA          A       C^   AAAAAU 
       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Drosha cut -1 on the 3p arm.
3' NTU No
MotifsNo
Tissue expression
-   +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Star sequence

Sme-Mir-36-P19_5p*
mirBase accessionMIMAT0012141
Sequence 
0- GAUUGAUGUUAUUCGGUAUGA -21
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Mature sequence

Sme-Mir-36-P19_3p
mirBase accessionMIMAT0011242
Sequence 
37- UCACCGGGUAGACAUUAAUCAU -59
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